Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1422 ATGGAGGTTTCATGCTCGACCCTCACAACGTTGACTTCTGCTGCTCCGAAATCAGCTTCGGAATCGGAAGATGGAAGCTCTGCATTTTCACACATTCTTCCAGTCCCTGAAATCCCAATTTATGCTGTGATAGCTGCTTTCAGGGAAGACCCCAGCCCCGTCAAGCTGAATTTGAGTTTTGGTGTTTATCGAACAGAGGATGGGAAACCTTTTCTTCCAAATGCAGTGAGAAGGGCAGAGCATCTAATTGTTAATGACATGTCAAGAAATAAGGAATACATTCATATGAATGGAACTGAAGAATTTACTAAGTTGAGTGCTAAGCTCATCTTAGGTGCTGACAGTCCTGCAATTAAGGAGAAGAGAGTCACAACTGTTCAGAGCTTGTCTGGGTCTGGAGCACTAAGAATAGGAGCTGAGATTTTAGCAAAACACTACCACCAATATACGGTATATCTCCCCAGTCCCACATATGGGAACCACCCAAATTTTTTCTATGCAGTAGGACTAGATGTTAAAACTTATCGTTACTACGATCCAGAAACACATGGGCTAGACTTTCAAGGCTTGTTGGAGGACCTTGAAGCTGCCCCTTTAGGATCCGTGGTTCTTCTTCATGCTTGTGGTCATAATCCCACTGGCGTCGACCCCACCATTCAACAATGGGAGAAGATGAGACAGTTGATCAGATCGAAAAGACTCTTGCCTTTCTTCGACTCTGCTTATCAGGGTCTTGTGAGTGGAAACGTGGAGGTGGATGCAGAGTCTGTTAGGCTATTTGCTGCTGATGGTGGAGAATGTCTAATTGCTCAGTCTTATTCCAAGATTATGGGACTATATGGAGAACGTGTTGGAGCACTTAGCATTGTTTGCAAGGAAGCTGAAGTAGCTGAGACATTAGCAGTGGAGCTAAAAACTGTGATCCTCGGCCTGTATCTAACCCCGCCCATTCATGGTGCATCCATCGTCACAGCTATCCTCAAGGACCGGGAATTGTATAATGAATGGGGTATCGACTTGAAGGTGATGACCGACCGTCTTATTTCCACACGCCAGCAACTCGTGAATGCTTTAAGTAGTAGGGGTACACCTGGGAACTGGAGTCACATAAAGCAGCAGGTAGGAATGTATTCCATATCGGGATTGACCGAAGAGCAAGTTGCTTGTATAACTAGAGAATTCCATATTTACATGCCAGCTGATGGAAGGATAAACATAGCCGGTTTAGGTCCGAAGACAGTTCCTCTTGTTGCGGATGCAATTCATGCAGTTGTTACCTCTGCTATCTGA 1290 44.96 MEVSCSTLTTLTSAAPKSASESEDGSSAFSHILPVPEIPIYAVIAAFREDPSPVKLNLSFGVYRTEDGKPFLPNAVRRAEHLIVNDMSRNKEYIHMNGTEEFTKLSAKLILGADSPAIKEKRVTTVQSLSGSGALRIGAEILAKHYHQYTVYLPSPTYGNHPNFFYAVGLDVKTYRYYDPETHGLDFQGLLEDLEAAPLGSVVLLHACGHNPTGVDPTIQQWEKMRQLIRSKRLLPFFDSAYQGLVSGNVEVDAESVRLFAADGGECLIAQSYSKIMGLYGERVGALSIVCKEAEVAETLAVELKTVILGLYLTPPIHGASIVTAILKDRELYNEWGIDLKVMTDRLISTRQQLVNALSSRGTPGNWSHIKQQVGMYSISGLTEEQVACITREFHIYMPADGRINIAGLGPKTVPLVADAIHAVVTSAI 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10119671 10122205 - Conep07aG0146400.1 Cone7ag1422 442018

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1422 429 MobiDBLite consensus disorder prediction 1 26 - -
Cone7ag1422 429 PANTHER ASPARTATE AMINOTRANSFERASE 17 427 IPR000796 GO:0004069(PANTHER)|GO:0005739(PANTHER)|GO:0006520(InterPro)|GO:0008483(InterPro)
Cone7ag1422 429 PRINTS Aspartate aminotransferase signature 203 222 IPR000796 GO:0006520(InterPro)|GO:0008483(InterPro)
Cone7ag1422 429 PRINTS Aspartate aminotransferase signature 234 246 IPR000796 GO:0006520(InterPro)|GO:0008483(InterPro)
Cone7ag1422 429 PRINTS Aspartate aminotransferase signature 302 327 IPR000796 GO:0006520(InterPro)|GO:0008483(InterPro)
Cone7ag1422 429 PRINTS Aspartate aminotransferase signature 370 388 IPR000796 GO:0006520(InterPro)|GO:0008483(InterPro)
Cone7ag1422 429 FunFam Aspartate aminotransferase 88 329 - -
Cone7ag1422 429 SUPERFAMILY PLP-dependent transferases 28 425 IPR015424 -
Cone7ag1422 429 Gene3D - 87 329 IPR015421 -
Cone7ag1422 429 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 272 285 IPR004838 GO:0003824(InterPro)|GO:0009058(InterPro)|GO:0030170(InterPro)
Cone7ag1422 429 Gene3D Aspartate Aminotransferase, domain 1 39 421 IPR015422 -
Cone7ag1422 429 CDD AAT_like 56 409 - -
Cone7ag1422 429 Pfam Aminotransferase class I and II 55 421 IPR004839 GO:0009058(InterPro)|GO:0030170(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1422 K14454 - - gmx:547509 561.222
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1531 Cone-Chr4:11849531 Cone7ag1422 Cone-Chr7:10119671 6.17E-195 dispersed
Cone4ag1758 Cone-Chr4:12909807 Cone7ag1422 Cone-Chr7:10119671 2.01E-118 dispersed
Cone7ag1422 Cone-Chr7:10119671 Cone7ag1676 Cone-Chr7:11235356 3.52E-112 dispersed
Cone7ag1421 Cone-Chr7:10118175 Cone7ag1422 Cone-Chr7:10119671 1.95E-19 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g325 Blo01g01369 Blo12g00761 . Bda03g00424 . Bpe02g00176 Bma04g00400 Bma01g02550 . . Cma01g01602 . Car09g00487 . . . Cpe06g00422 . . . . . . . . . . . . . . Cone4ag1531 Cone7ag1422 . . Lsi04g02230 Csa03g04441 Chy04g00259 . . . . . . Bpe04g00072 . . Sed05g1604 Cmo01g01649 Cmo09g00545 Cma09g00555 . Car01g01222 . . Cpe02g00376 Bhi09g02426 Tan01g3784 Cmetu04g1897 . Hepe01g2123 Mch11g0661 . Cla08g01356 Cam08g1821 Cec08g1400 Cco08g1530 Clacu08g1516 . Cre08g1302 . . . Cme04g00290
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0054058 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1