Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1426 ATGTCCTTCAGAGCTGGGATCCAACCCTTGTCAATCCCTGTACATGGTTTCATGTTACGTGCAATAACGATAATAGTGTCATCAGAGTCTTTGTCAGGTCAACTCGTTCCACAGCTCGGCCAGCTCAAGAATCTCCAGTATCTAGAACTCTACAGTAATAAAATAGGTGGATCTATTCCTAGTGACCTGGGGAACCTAACTAGCTTGGTCAGCTTGGATCTTTACTTGAACAATTTTTCCGGCCCTATACCAGACACATTGGGCAAATTATCTAAATTGCGATTCTTCCGGCTTAACAACAACAGCTTGTCGGGTTCTATTCCCTTGTCGTTGACTAATATCACAGCACTTCAAGTGTTGGATCTGTCAAATAACCGTCTTGCAGGAGTGGTCCCGGACAATGGTTCTTTCTCCCTGTTCACTCCTATCAGTTTTGCTAACAATTTGGATCTCTGTGGCCCGGTTACAGGGCATCCCTGCCCTGGATCTCCTCCTTTTTCTCCTCCTCCTCCATTTGTCCCACCATCCCCTATTTCTTCACCAGACGGTAATAGTGCAACCGGAGCAATCGCCGGAGGAGTTGCTGCCGGCGCCGCTTTACTCTTTGCCGCTCCAGCTATTATATTTGCATGGTGGCGTAAAAGAAAACCACAAGAATTTTTCTTTGATGTGCCTGCCGAAGAGGATCCAGAAGTCCATCTGGGTCAGCTTAAAAGATTCTCATTGCGAGAATTACAAGTCGCCACGGACACTTTTAGTAACAAAAACATACTGGGTAGGGGCGGATTTGGTAAAGTATATAAAGGACGTTTGGCAGATGGAACACTTGTAGCCGTAAAGAGGCTAAAAGAAGAACGGACACCTGGAGGAGAACTGCAGTTTCAAACTGAAGTCGAGATGATCAGCATGGCTGTGCATCGGAATCTCCTCCGATTGCGTGGGTTTTGCATGACCCCAACCGAACGACTCCTCGTTTATCCCTACATGGCTAATGGAAGCGTCGCATCTTGCTTAAGAGAACGTCCGCCCACTCAGCCACCTCTAGAATGGCAAGCAAGGAAGCAGATCGCACTAGGATCAGCAAGGGGGCTTTCTTACTTACATGATCATTGTGATCCCAAGATTATTCATCGAGATGTAAAAGCAGCTAACATTTTACTGGACGAAGAGTTTGAGGCTGTTGTAGGGGACTTTGGTTTGGCTAAGCTTATGGACTACAAGGACACTCATGTCACTACAGCTGTTCGTGGCACTATTGGACATATAGCTCCAGAGTATCTTTCTACCGGAAAGTCCTCAGAAAAAACAGATGTTTTTGGTTATGGGATTATGCTTCTTGAGCTTATCACTGGACAGAGAGCTTTTGATCTTGCCCGGCTTGCCAATGATGATGATGTCATGTTGCTTGATTGGGTGAAAGGGCTTTTGAAAGAGAAGAAGTTGGAAATGCTGGTTGATCCTGATCTGCAGAAAAACTATGTAGAATCGGAGGTGGAGCAGTTGATCCAGGTGGCACTGCTCTGCACACAAGGTTCCCCAATGGAGCGTCCAAAAATGTCGGAAGTAGTTAGAATGCTTGAAGGTGACGGGTTAGCTGAGAAATGGGATGAGTGGCAAAAGATTGAAGTTCTACGTCAAGAACTGGAGCTAACAACTCATTCCCATTCTGATTGGATTCTTGACTCTACTGAAAATCTACATGCTGTTGAGCTTTCAGGTCCAAGATAA 1728 45.72 MSFRAGIQPLSIPVHGFMLRAITIIVSSESLSGQLVPQLGQLKNLQYLELYSNKIGGSIPSDLGNLTSLVSLDLYLNNFSGPIPDTLGKLSKLRFFRLNNNSLSGSIPLSLTNITALQVLDLSNNRLAGVVPDNGSFSLFTPISFANNLDLCGPVTGHPCPGSPPFSPPPPFVPPSPISSPDGNSATGAIAGGVAAGAALLFAAPAIIFAWWRKRKPQEFFFDVPAEEDPEVHLGQLKRFSLRELQVATDTFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPPTQPPLEWQARKQIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEMLVDPDLQKNYVESEVEQLIQVALLCTQGSPMERPKMSEVVRMLEGDGLAEKWDEWQKIEVLRQELELTTHSHSDWILDSTENLHAVELSGPR 575
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10133383 10136946 - Conep07aG0146800.1 Cone7ag1426 442022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1426 575 SUPERFAMILY Protein kinase-like (PK-like) 231 527 IPR011009 -
Cone7ag1426 575 Gene3D Ribonuclease Inhibitor 14 161 IPR032675 -
Cone7ag1426 575 ProSitePatterns Protein kinases ATP-binding region signature. 258 280 IPR017441 GO:0005524(InterPro)
Cone7ag1426 575 SMART serkin_6 252 526 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone7ag1426 575 Gene3D Transferase(Phosphotransferase) domain 1 329 546 - -
Cone7ag1426 575 FunFam Somatic embryogenesis receptor kinase 1 19 162 - -
Cone7ag1426 575 ProSiteProfiles Protein kinase domain profile. 252 539 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone7ag1426 575 FunFam Somatic embryogenesis receptor kinase 1 221 328 - -
Cone7ag1426 575 SUPERFAMILY L domain-like 18 141 - -
Cone7ag1426 575 Gene3D Phosphorylase Kinase; domain 1 221 328 - -
Cone7ag1426 575 Pfam Protein tyrosine and serine/threonine kinase 255 526 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone7ag1426 575 FunFam Somatic embryogenesis receptor-like kinase 1 329 546 - -
Cone7ag1426 575 ProSitePatterns Serine/Threonine protein kinases active-site signature. 375 387 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone7ag1426 575 Pfam Leucine Rich Repeat 92 113 IPR001611 GO:0005515(InterPro)
Cone7ag1426 575 Pfam Leucine Rich Repeat 68 90 IPR001611 GO:0005515(InterPro)
Cone7ag1426 575 Pfam Leucine Rich Repeat 117 133 IPR001611 GO:0005515(InterPro)
Cone7ag1426 575 Pfam Leucine Rich Repeat 44 66 IPR001611 GO:0005515(InterPro)
Cone7ag1426 575 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 22 575 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0232 Cone-Chr12:1231244 Cone7ag1426 Cone-Chr7:10133383 6.93E-161 dispersed
Cone6ag1226 Cone-Chr6:9656277 Cone7ag1426 Cone-Chr7:10133383 5.70E-148 dispersed
Cone7ag1426 Cone-Chr7:10133383 Cone8ag0793 Cone-Chr8:7971620 1.69E-259 dispersed
Cone4ag1526 Cone-Chr4:11830753 Cone7ag1426 Cone-Chr7:10133383 1.77E-298 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83061 PF00226 DnaJ 1.40E-21 CL0392 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1426 K13418 - gmx:100789884 951.429