Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1439 ATGGATCGGTACTACTCATCATCAGACCAATCTTCATCAGGCAGGAGTACTAGTACTAGTAATACACCTAGAAGAGAGCTTCAAGGTCCGAGACCAACCCCTTTGAAGGTAAACAAGGAATCTCACAAAATCAGAAAGCCGCCTTTGGCACCACCACAAGGACCGGTGGTGCAGCCCCAATCACAACCGCAGCAGCCTCGTCTCCCTGTGATAATCTACACGGTCTCTCCGAAGATAATCCATACAAATCCTAGCGACTTTAGGAACCTAGTGCAAAGACTGACCGGCTTATCATCTTCATCGAATAATTCAGATTCGTCATCGAGCAATATCATTGATATTCCTTCGCAAGATCATATGAACTATAACATGACACGGGGTGCGACCGTATCGCCTGCGGCTCGTTACGCAATGATCAAGAAGGCGGCTAGGGCAGTTGATAATGATCGTCATCATGGGGGTGGTCAAAGGAAAAGAAGCAGTGATGTGGATGATCATCATAATGATGAGGTGGAGAGATTGGGGATAGGTGGTTATAATCCAGCGGGAATACTATCGCCCGGGCCCGCTTTGTTGCCTCAAATACCGACAAGTTTTTTCTCTCCGCCGTGTGATCCGAGCCCTTGGAGCTTGTTTTGTGATATGAGTCCTGTTCTTCAAGGGAGTAGTAGGAACTTCATAATGGGAGGTAATTCTTTCATGCCAAGTCCTTCTAGTTTTCATGTCTCACCTCTTAGTACATCCCCTACTCCATCCTTTGATTTGTTCAACAATTTCCAAGAGAAACAATTATGA 795 45.91 MDRYYSSSDQSSSGRSTSTSNTPRRELQGPRPTPLKVNKESHKIRKPPLAPPQGPVVQPQSQPQQPRLPVIIYTVSPKIIHTNPSDFRNLVQRLTGLSSSSNNSDSSSSNIIDIPSQDHMNYNMTRGATVSPAARYAMIKKAARAVDNDRHHGGGQRKRSSDVDDHHNDEVERLGIGGYNPAGILSPGPALLPQIPTSFFSPPCDPSPWSLFCDMSPVLQGSSRNFIMGGNSFMPSPSSFHVSPLSTSPTPSFDLFNNFQEKQL 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10195304 10196098 + Conep07aG0148100.1 Cone7ag1439 442035

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1439 264 PANTHER F16F4.1 PROTEIN-RELATED 27 233 IPR039607 GO:0005634(PANTHER)
Cone7ag1439 264 MobiDBLite consensus disorder prediction 1 65 - -
Cone7ag1439 264 MobiDBLite consensus disorder prediction 144 167 - -
Cone7ag1439 264 Pfam VQ motif 74 100 IPR008889 -
Cone7ag1439 264 MobiDBLite consensus disorder prediction 1 27 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1439 K20725 - - cit:102624969 189.889
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone7ag1439 Cone-Chr7:10195304 Cone8ag0033 Cone-Chr8:205845 2.50E-27 dispersed
Cone13ag0825 Cone-Chr13:7514048 Cone7ag1439 Cone-Chr7:10195304 7.97E-14 transposed
Cone12ag0031 Cone-Chr12:226300 Cone7ag1439 Cone-Chr7:10195304 4.30E-27 wgd
Cone4ag1512 Cone-Chr4:11751028 Cone7ag1439 Cone-Chr7:10195304 1.46E-129 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g276 . . . . . . . . . . Cma01g01604 . . . . . . . . . . . . . . . . . . . . . Cone7ag1439 . . . Csa03g04544 Chy04g00158 Cme03g01761 . . . . . . . . . Cmo01g01494 Cmo09g00612 . . Car01g01224 . . Cpe02g00508 . . . . . . . . . . . . . . Lsi08g01069 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006596 3 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 0 1 1 1 1 0 2 1 0 38