Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1441 ATGGCAGATCTTGTTAGTTATGGGAATGCCAACCGTGACATCGAGAAGGCATTAATTGCTTTGAAGAAAGGCGGTCAACTGCTCAAGTATGGTCGTAAAGGAAAGCCTAAGTTCTGTTCATTTAGACTTTCTAGTGATGAATCAACTTTGATTTGGATTTCAAGTGGCGGTGAAAAAAGTTTGAAGCTATTTTCTGTATCAAGAATTATTCCTGGACAAAGAACTGCTGTATTTCGACGGTTTCCCCGACCCGAAAAGGACTATTTGTCTTTCTCTCTTATATACAACAACAGAAAGCGGTCCCTTGATCTGATTTGCAAGGATAAAGTTGAGGCAGAGGTTTGGATTGCAGGCCTGAAAGCATTAATATCATCTGGTCAGTGTGGCCGTTCCAAAATTGATGGGTGGAATGATGGCGGTCTCTACCCTGATGATGGCAGTGACTTGACATTAAACAGCCCAAGTGAAGGTTCCAACGGTGCGACAAGAGATACCAGCTCTCCGGAGGTCCCTGTCAGCTTCAATACAAATATGTCTCCAAAGAATTTTGGACCTGAGAATTCTGTACACTTTGAAAAGTCACATGTAGCTGCATTGGGCCAGACAAATATGCAACCAAAAGGATCTAATCCAGATATATTTCGAGTTAGTGTTTCAAGTGCTCTGAGTACATCCAGTCATGGCTCTGCAACAGACGATTGTGATGCTCTAGGAGATGTATACATATGGGGTGAGGTTATTTGTGATAATAACTTGAAGTATATTGCTGATAAAAATGCCAATAATGTAAACCCTAGGACGGATGTGCTACTCCCTAGACCATTAGAGTCCAACATAGTTTTGGATGTTCATCATATAGCCTGTGGGGTCAGACATTCTGCCCTAGTCACAAGACAAGGTGAAGTCTTTACATGGGGTGAAGAATCTGGCGGACGGCTTGGACATGGTATAGGGAAGGATGTTATTCAACCTCGTCTAGTTGAATCTTTGGTGGCAACCACTGTCGATTTTATGGCATGTGGAGAGTTTCATACATGTGCTGTTACAATGGCAGGGGAACTTTATACGTGGGGAGATGGTACTCATCATGCTGGGCTTCTTGGTCATGGCACCGTTATCAGTCATTGGATACCGAAGAGAATCTTGGGTCCCCTAGAGGGGCTTCAAGTTGTTTCAGTGACATGTGGGCCATGGCACACTGCATTGGTAACCTCAACGGGCCAGCTCTTCACTTTTGGTGATGGTACATTTGGTGTGTTGGGCCATGGAGACAGAGAAAATGTTTCATATCCGAGAGAAGTGGAGTCTTTATCAGGTTTGAGGACGATTTATGTTGCATGCGGGGTGTGGCATACTGCTGCTGTGGTAGAAGTTATTGCTACACAATCTTGTGCAAGCGTTCCATCAGGTAAACTGTTCACTTGGGGAGATGGAGACAAGAATCGTTTAGGGCATGGTGATAGGGAACCCCGGCTTAAACCTACCTGTGTTCTCGCACTGATAGAGTACAATTTCCACAAAATCGCTTGTGGTCATAGTTTAACTGTTGGCTTGACGACATCTGGACAAGTTTTCACAATGGGTAGTACTGTCTGTGGTCAGCTTGGGAATCCCCGTGCTGATGGAAAGCTACCTTGCTTGGTAGAAGATAAGCTTTCAGGGGAATATGTTGAAGAAGTTACTTGTGGCGCATATCATGTGGCAGTTTTGACATCCAAAAATGAAGTTTATACCTGGGGAAAGGGTGCAAATGGGAGGCTGGGTTATGGAGATGCTGAAGATAAGAAAACACCAACTCTGGTGGAAGCTTTGAAGGATAGGCATGTGAAATATATTGCTTGTGGTTCAAACTACTCTGCAGCTATTTGCCTTCACAAGTGGGTATCAGGTGCTGAGCAGTCACAGTGTTCTTCTTGTAGACAGGCTTTTGGTTTCACACGGAAGAGGCATAACTGCTATAACTGTGGACTAGTGCACTGCCATTCATGCAGTTCCAGAAAAGCTTTTAGAGCGGCAATGGCTCCTAACCCGAGCAAACCATATCGTGTATGTGATTCATGTCATTTGAAATTAAGCAAGGAGTTAGAATCTGGTGGTAATAACAGGAAGAATGTTATACCTCGTTTGTCAGGTGAGAACAAGGATAGGTTAGACAGGAGTGAGGTAAGATTGTCTAAATCAGTGCCTTCTAATATAGATAGTAAAGCTGCAAAACAAGGAAAGAAAGCAGATGCATTCTCTCTCGCTCGCCCCTCTCAATCACCTCCTTTGCTGGTTAGAGATGCTGTTATGTCCAGTGTTTTTGATCTACGACAGACAGCTCCAAAACCAGCACTTACAGGTTCTGGAGTAAGTTCTAGGTCTGTTTCTCCCTTCTCAAGGAGATCAAGTCCCCCACGATCTGCTACACCTGTTCCTACAGCAGCAGGACTGTCCTTTTCCAAAAGTATTGCTGATAGCTTGAAGAAAACAAATTACCTTTTGAATCAAGAGGTGCTTAAGTTTCGAGCTCAGGTTGAGAGTCTGAAACAGAGATGTGAACTTCAAGAATTAGAGGCCCAGGAGTCAGCCAAGAAAGCCCAAGAAGCTATGACTCTGGTTGCAGAGGAATCTACTAGATCTAAAGCAGCAAAAGAAGTTATCAAGTCGCTAACTGATCAGCTCAGAGATATGGCTGAGAGTCTACCCCCTGGGGTTTATGACTCAGACAACATGAGACAAGCACATCTCCCTAATGGTGTGGAGCCAAATGGTGTCCACTACCGAGACACAAATGGGGAACGCCATTCCAGATCTGATTCATTTGGCTCTTCTTCCTTGGCTTCTCCAACAGCAATCAAATCTACTGCAATGAATGGAAATCATTACCCACCTCATTCGTCTAAGGAACTGCCTGGAATCAATGAAACCACTGTGCAACCAAACCAGGCACTTCTTACCTCCAATGGGACAGAAAACCATCCAGATATCAATCTACGATATAGTGCTGTTCGGACTAGTAGTAGTAGTAGTGTGTCTGAAAGCCTTGGTGGCACAGCGTCCATACAAGATGGTGAGAATACTGCTAGACTGAGTAATTCTGCATCAGCATCTAATAATGCTAATCAAGTCGAGGCAGAATGGATCGAACAATATGAACCTGGTGTTTACATAACCCTTATGACACTAAAAGACGGAACTAGAGATCTCAAACGAGTTCGCTTCAGCCGAAGGAGATTTGGAGAGCATCAAGCGGGGAACTGGTGGTCTGAGAACCGTGAAAGGGTGTATGAGAAATTCAATGTTCGTGGCTCTGACAGATCTTCAGTTTCAGACCAGAAATCAAGGAGGTCAGGGGGAAGTAGCTATCTCAACTAG 3357 44.21 MADLVSYGNANRDIEKALIALKKGGQLLKYGRKGKPKFCSFRLSSDESTLIWISSGGEKSLKLFSVSRIIPGQRTAVFRRFPRPEKDYLSFSLIYNNRKRSLDLICKDKVEAEVWIAGLKALISSGQCGRSKIDGWNDGGLYPDDGSDLTLNSPSEGSNGATRDTSSPEVPVSFNTNMSPKNFGPENSVHFEKSHVAALGQTNMQPKGSNPDIFRVSVSSALSTSSHGSATDDCDALGDVYIWGEVICDNNLKYIADKNANNVNPRTDVLLPRPLESNIVLDVHHIACGVRHSALVTRQGEVFTWGEESGGRLGHGIGKDVIQPRLVESLVATTVDFMACGEFHTCAVTMAGELYTWGDGTHHAGLLGHGTVISHWIPKRILGPLEGLQVVSVTCGPWHTALVTSTGQLFTFGDGTFGVLGHGDRENVSYPREVESLSGLRTIYVACGVWHTAAVVEVIATQSCASVPSGKLFTWGDGDKNRLGHGDREPRLKPTCVLALIEYNFHKIACGHSLTVGLTTSGQVFTMGSTVCGQLGNPRADGKLPCLVEDKLSGEYVEEVTCGAYHVAVLTSKNEVYTWGKGANGRLGYGDAEDKKTPTLVEALKDRHVKYIACGSNYSAAICLHKWVSGAEQSQCSSCRQAFGFTRKRHNCYNCGLVHCHSCSSRKAFRAAMAPNPSKPYRVCDSCHLKLSKELESGGNNRKNVIPRLSGENKDRLDRSEVRLSKSVPSNIDSKAAKQGKKADAFSLARPSQSPPLLVRDAVMSSVFDLRQTAPKPALTGSGVSSRSVSPFSRRSSPPRSATPVPTAAGLSFSKSIADSLKKTNYLLNQEVLKFRAQVESLKQRCELQELEAQESAKKAQEAMTLVAEESTRSKAAKEVIKSLTDQLRDMAESLPPGVYDSDNMRQAHLPNGVEPNGVHYRDTNGERHSRSDSFGSSSLASPTAIKSTAMNGNHYPPHSSKELPGINETTVQPNQALLTSNGTENHPDINLRYSAVRTSSSSSVSESLGGTASIQDGENTARLSNSASASNNANQVEAEWIEQYEPGVYITLMTLKDGTRDLKRVRFSRRRFGEHQAGNWWSENRERVYEKFNVRGSDRSSVSDQKSRRSGGSSYLN 1118
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10201294 10207722 + Conep07aG0148300.1 Cone7ag1441 442037

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1441 1118 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 286 296 IPR000408 -
Cone7ag1441 1118 ProSiteProfiles BRX domain profile. 1039 1094 IPR013591 -
Cone7ag1441 1118 MobiDBLite consensus disorder prediction 948 967 - -
Cone7ag1441 1118 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 352 406 IPR000408 -
Cone7ag1441 1118 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 445 455 IPR000408 -
Cone7ag1441 1118 Gene3D - 459 631 IPR009091 -
Cone7ag1441 1118 SUPERFAMILY FYVE/PHD zinc finger 626 698 IPR011011 -
Cone7ag1441 1118 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 407 458 IPR000408 -
Cone7ag1441 1118 MobiDBLite consensus disorder prediction 698 751 - -
Cone7ag1441 1118 MobiDBLite consensus disorder prediction 708 723 - -
Cone7ag1441 1118 MobiDBLite consensus disorder prediction 1095 1118 - -
Cone7ag1441 1118 MobiDBLite consensus disorder prediction 148 173 - -
Cone7ag1441 1118 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 300 351 IPR000408 -
Cone7ag1441 1118 FunFam PH, RCC1 and FYVE domains-containing protein 1 209 459 - -
Cone7ag1441 1118 Pfam Transcription factor regulating root and shoot growth via Pin3 1038 1093 IPR013591 -
Cone7ag1441 1118 MobiDBLite consensus disorder prediction 1001 1034 - -
Cone7ag1441 1118 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 238 299 IPR000408 -
Cone7ag1441 1118 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 632 701 IPR013083 -
Cone7ag1441 1118 Pfam Regulator of chromosome condensation (RCC1) repeat 407 455 IPR000408 -
Cone7ag1441 1118 Pfam Regulator of chromosome condensation (RCC1) repeat 469 517 IPR000408 -
Cone7ag1441 1118 Pfam Regulator of chromosome condensation (RCC1) repeat 299 348 IPR000408 -
Cone7ag1441 1118 Pfam Regulator of chromosome condensation (RCC1) repeat 352 403 IPR000408 -
Cone7ag1441 1118 Pfam Regulator of chromosome condensation (RCC1) repeat 521 570 IPR000408 -
Cone7ag1441 1118 Pfam Regulator of chromosome condensation (RCC1) repeat 575 622 IPR000408 -
Cone7ag1441 1118 MobiDBLite consensus disorder prediction 778 808 - -
Cone7ag1441 1118 Gene3D - 13 129 IPR011993 -
Cone7ag1441 1118 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 393 403 IPR000408 -
Cone7ag1441 1118 Pfam Pleckstrin homology domain 20 123 IPR001849 -
Cone7ag1441 1118 MobiDBLite consensus disorder prediction 1097 1118 - -
Cone7ag1441 1118 ProSiteProfiles PH domain profile. 20 124 IPR001849 -
Cone7ag1441 1118 SUPERFAMILY RCC1/BLIP-II 237 627 IPR009091 -
Cone7ag1441 1118 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 470 521 IPR000408 -
Cone7ag1441 1118 PRINTS Chromosome condensation regulator RCC1 signature 408 424 IPR000408 -
Cone7ag1441 1118 PRINTS Chromosome condensation regulator RCC1 signature 560 576 IPR000408 -
Cone7ag1441 1118 PRINTS Chromosome condensation regulator RCC1 signature 576 590 IPR000408 -
Cone7ag1441 1118 PRINTS Chromosome condensation regulator RCC1 signature 442 455 IPR000408 -
Cone7ag1441 1118 SUPERFAMILY PH domain-like 14 123 - -
Cone7ag1441 1118 MobiDBLite consensus disorder prediction 893 941 - -
Cone7ag1441 1118 Gene3D - 184 458 IPR009091 -
Cone7ag1441 1118 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 574 625 IPR000408 -
Cone7ag1441 1118 CDD PH_PLC_plant-like 12 124 - -
Cone7ag1441 1118 Pfam Transcription factor BRX N-terminal domain 869 904 IPR027988 -
Cone7ag1441 1118 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 522 573 IPR000408 -
Cone7ag1441 1118 Pfam FYVE zinc finger 626 692 IPR000306 GO:0046872(InterPro)
Cone7ag1441 1118 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 179 1068 IPR051210 -
Cone7ag1441 1118 FunFam PH, RCC1 and FYVE domains-containing protein 1 460 631 - -
Cone7ag1441 1118 SMART fyve_4 624 693 IPR000306 GO:0046872(InterPro)
Cone7ag1441 1118 Coils Coil 832 859 - -
Cone7ag1441 1118 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 630 692 IPR017455 -
Cone7ag1441 1118 MobiDBLite consensus disorder prediction 775 808 - -
Cone7ag1441 1118 MobiDBLite consensus disorder prediction 144 173 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1441 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag1230 Cone-Chr6:9717003 Cone7ag1441 Cone-Chr7:10201294 8.83E-21 dispersed
Cone7ag0325 Cone-Chr7:1418135 Cone7ag1441 Cone-Chr7:10201294 0 dispersed
Cone7ag1441 Cone-Chr7:10201294 Cone9ag0600 Cone-Chr9:2830304 1.63E-274 dispersed
Cone4ag1242 Cone-Chr4:10313636 Cone7ag1441 Cone-Chr7:10201294 1.54E-19 transposed
Cone17ag0794 Cone-Chr17:6217331 Cone7ag1441 Cone-Chr7:10201294 0 wgd
Cone20ag0391 Cone-Chr20:1862657 Cone7ag1441 Cone-Chr7:10201294 0 wgd
Cone4ag1510 Cone-Chr4:11730241 Cone7ag1441 Cone-Chr7:10201294 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1250 Blo01g01332 Blo12g01105 Bda01g00698 Bda03g00034 Bpe02g00609 Bpe04g00023 Bma04g00032 Bma01g02116 Cmo04g02551 Cmo15g00619 Cma01g00988 . Car01g00880 . . Cpe06g00896 Cpe13g00670 . . . . . . . Cla08g00677 Cam08g1107 Cec08g0692 Cco08g0801 Clacu08g0813 . Cre08g0617 Cone4ag1510 Cone7ag1441 Cone17ag0794 Cone20ag0391 . . . Cme03g00380 Blo17g00217 Blo18g00216 . Bda13g01525 Bpe02g01605 Bpe14g00336 Bma01g00865 Bma02g00275 . Cmo01g01025 . . . Car04g02348 Car09g00994 Cpe01g02108 . Bhi09g01500 . . . . . . Cla09g00924 Cam09g0977 Cec09g0982 Cco09g0988 . . Cre09g0945 Lsi08g00535 . Chy03g00542 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000956 5 4 4 4 4 2 4 2 2 2 2 2 3 2 2 4 2 4 4 2 4 2 2 2 2 2 2 4 2 1 83