Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1446 ATGCTGGGGGAGTCAGGTAGTTGTGTTTTAGGCAGCTCAGTAGACGCCGTGGAGGTGTCGGCGACATCTCATCACCAGCATGATGGGAGCAGCGAGGGAGGCAATTGCGGCGGAGCAGCATCAAGTTCAGCTGAAGAAGATATTACTAGAGGCGGAGGAGGAGGAGGAGGAGAGAGAATTAGGGGCGATTTTGGTGGAAATAGGTGGCCGAGACAAGAAACCTTAGCACTCTTGAAGATTCGGTCCGACATGGACGTGGCTTTCAGAGATGCAAGCGCTAAGGGTCCATTGTGGGATGAAGTTTCCAGGAAACTAGCAGAGCTTGGGTATCATCGAAACGCAAAGAAGTGCAAAGAGAAATTCGAGAACTTGTACAAGTACCATAAAAGAACCAAAGAAGGCCGGAGTGGAAAACCCGACGGCAAGACTTATCGGTTTTTTGACCAGTTACAAGCCCTTGAAAATCAACCGCCTCCTTCCATTTTCCATACAACTACTATTACTACAACAACTACTACTACTACGCCTCATGATAATACACTATACCCTAAACCTCCACCTCAACAACCACAGGTGCCACCCCCACCTCCTCCTCCTTCTACGGTGGCGGCACCACCTAACCCTCAAACACTTCCTCTCATTAATCCTGGTACTGCTACTGCTCCATCAACTTCACCTCAACCTATGCCCAGCATCCTCACTACACTACCTTCATTTCCACAACCTAACAACCATGTAATTTTTGCACGGCCACCGCAACAGACGGCAACACCACCGGCCACAACCTCAAACCTTACAAATTCTTTCCAGCCAAGCAGTACTGTTCCGGTCCCGCCCTTTACTTTCGCAAACATTTCTACTGATCTTATTTCAAATTCCACCTCCTCTAACTGCTCGACGTCATCGGACGGGGAATTATCAGAAGGGCCGGGTATCAGACGAACCAGGAAGCGGAAATGGAAGGAATTTTTTGGGAGACTAATGAAGGAGGTGATTCAGAAGCAAGAGGATTTGCAGAAGAGATTCCTCGAAGCCATAGAGAAACGCGAGCATGAACGGATGGCACGAGAAGAGGCTTGGAGATTGCAGGAAATGGCCAAACTCAACAGAGAGCGCGAAATTCTAGCCCAAGAAAGATCAATGGCTGCCGCTAAGGATGCGGCCGTAATGGCATTTTTGCAAAAAGTAGCCGATCAACAGCCGAACCACAACCCGTCCGATCAGGTCCAAATCAAAATTCCGTTACAACCACCTCCACAGCCAGCGCCAGCATCATCTTCTCAAGCGGCAACACCACAATCGGACCCACCACCTCCTCCACGATTCACAACTATTACTCATGTACTACCACAACAGAATATTACAGTTACAAGAGATCATCATGAAGTTCCAAATAAAGGCGATCATGATAATTTCATGATGATATCGACGATTAGCTCCTCAAGATGGCCAAAAGTGGAGGTTCAAGCATTGATCAAGTTACGTGCTGATCTCGACACCAAGTATCAAGAGAACGGGCCGAAGGGCCTACTGTGGGAGGAGATCTCAACCGCAATGAAAAACCTAGGCTACAACAGGAATGCCAAAAGATGCAAAGAGAAATGGGAGAACATCAACAAGTACTTCAAGAAAGTGAAGGAGAGCAATAAGAAACGACCCGAGGATTCAAAGACCTGCCCGTATTTTCACCAGCTGGACGCATTATACAAGGAGAAGAACAAGCTGTTTGAGAGTAGTACTGCTGCTTCATCTAATAATCAAAGTAACAATTCATTGGCGGCTGCTCCAATGATGGTTCGGCCCGAGCAGCAATGGCCTCCGCAGCAAGAGATTGCCCGGCCCGAGTCGGGCAATGAGGATATGGAGAGTGAGGCATTAATGGATCAACAGCATGGAGACGGAGAAAAAGATGTTGATGATGATAGTGATGGGAGTCATAATGAGGAGGAGGAGCAAGAAGAAGATGAGGGTGGTGGACATTATGAGATAGTGGCTAGCAAACCAGGTAATTCTTCAGTGGGCCCTGAGTGA 2031 47.96 MLGESGSCVLGSSVDAVEVSATSHHQHDGSSEGGNCGGAASSSAEEDITRGGGGGGGERIRGDFGGNRWPRQETLALLKIRSDMDVAFRDASAKGPLWDEVSRKLAELGYHRNAKKCKEKFENLYKYHKRTKEGRSGKPDGKTYRFFDQLQALENQPPPSIFHTTTITTTTTTTTPHDNTLYPKPPPQQPQVPPPPPPPSTVAAPPNPQTLPLINPGTATAPSTSPQPMPSILTTLPSFPQPNNHVIFARPPQQTATPPATTSNLTNSFQPSSTVPVPPFTFANISTDLISNSTSSNCSTSSDGELSEGPGIRRTRKRKWKEFFGRLMKEVIQKQEDLQKRFLEAIEKREHERMAREEAWRLQEMAKLNREREILAQERSMAAAKDAAVMAFLQKVADQQPNHNPSDQVQIKIPLQPPPQPAPASSSQAATPQSDPPPPPRFTTITHVLPQQNITVTRDHHEVPNKGDHDNFMMISTISSSRWPKVEVQALIKLRADLDTKYQENGPKGLLWEEISTAMKNLGYNRNAKRCKEKWENINKYFKKVKESNKKRPEDSKTCPYFHQLDALYKEKNKLFESSTAASSNNQSNNSLAAAPMMVRPEQQWPPQQEIARPESGNEDMESEALMDQQHGDGEKDVDDDSDGSHNEEEEQEEDEGGGHYEIVASKPGNSSVGPE 676
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10239024 10242084 + Conep07aG0148800.1 Cone7ag1446 442042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1446 676 Pfam Myb/SANT-like DNA-binding domain 481 568 IPR044822 -
Cone7ag1446 676 Pfam Myb/SANT-like DNA-binding domain 67 153 IPR044822 -
Cone7ag1446 676 MobiDBLite consensus disorder prediction 19 67 - -
Cone7ag1446 676 MobiDBLite consensus disorder prediction 19 38 - -
Cone7ag1446 676 PANTHER FI21293P1 35 614 - -
Cone7ag1446 676 MobiDBLite consensus disorder prediction 170 239 - -
Cone7ag1446 676 MobiDBLite consensus disorder prediction 292 306 - -
Cone7ag1446 676 MobiDBLite consensus disorder prediction 213 239 - -
Cone7ag1446 676 CDD GT1 481 546 - -
Cone7ag1446 676 MobiDBLite consensus disorder prediction 615 641 - -
Cone7ag1446 676 MobiDBLite consensus disorder prediction 399 442 - -
Cone7ag1446 676 Coils Coil 365 385 - -
Cone7ag1446 676 CDD GT1 67 132 - -
Cone7ag1446 676 ProSiteProfiles Myb-like domain profile. 61 125 IPR001005 -
Cone7ag1446 676 MobiDBLite consensus disorder prediction 292 313 - -
Cone7ag1446 676 MobiDBLite consensus disorder prediction 602 676 - -
Cone7ag1446 676 MobiDBLite consensus disorder prediction 642 657 - -
Cone7ag1446 676 MobiDBLite consensus disorder prediction 180 212 - -
Cone7ag1446 676 Gene3D - 69 130 - -
Cone7ag1446 676 Gene3D - 483 544 - -
Cone7ag1446 676 FunFam Trihelix transcription factor GT-2 483 544 - -
Cone7ag1446 676 ProSiteProfiles Myb-like domain profile. 475 539 IPR001005 -
Cone7ag1446 676 FunFam Trihelix transcription factor GT-2 69 130 - -
Cone7ag1446 676 PRINTS Proline rich extensin signature 219 231 - -
Cone7ag1446 676 PRINTS Proline rich extensin signature 251 272 - -
Cone7ag1446 676 PRINTS Proline rich extensin signature 190 206 - -
Cone7ag1446 676 PRINTS Proline rich extensin signature 175 187 - -
Cone7ag1446 676 PRINTS Proline rich extensin signature 412 437 - -
Cone7ag1446 676 SMART sant 65 127 IPR001005 -
Cone7ag1446 676 SMART sant 479 541 IPR001005 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0970 Cone-Chr16:9673740 Cone7ag1446 Cone-Chr7:10239024 9.31E-09 dispersed
Cone4ag1502 Cone-Chr4:11686614 Cone7ag1446 Cone-Chr7:10239024 4.19E-286 dispersed
Cone7ag1446 Cone-Chr7:10239024 Cone8ag0052 Cone-Chr8:272598 8.25E-119 dispersed
Cone7ag1446 Cone-Chr7:10239024 Cone7ag1447 Cone-Chr7:10247382 2.78E-116 tandem
Cone12ag0048 Cone-Chr12:281499 Cone7ag1446 Cone-Chr7:10239024 7.27E-120 wgd
Cone4ag1501 Cone-Chr4:11681355 Cone7ag1446 Cone-Chr7:10239024 2.97E-123 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46562 PF06728 PIG-U 5.50E-113 CL0111 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1446 - - - 0.0