Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone7ag1446 | ATGCTGGGGGAGTCAGGTAGTTGTGTTTTAGGCAGCTCAGTAGACGCCGTGGAGGTGTCGGCGACATCTCATCACCAGCATGATGGGAGCAGCGAGGGAGGCAATTGCGGCGGAGCAGCATCAAGTTCAGCTGAAGAAGATATTACTAGAGGCGGAGGAGGAGGAGGAGGAGAGAGAATTAGGGGCGATTTTGGTGGAAATAGGTGGCCGAGACAAGAAACCTTAGCACTCTTGAAGATTCGGTCCGACATGGACGTGGCTTTCAGAGATGCAAGCGCTAAGGGTCCATTGTGGGATGAAGTTTCCAGGAAACTAGCAGAGCTTGGGTATCATCGAAACGCAAAGAAGTGCAAAGAGAAATTCGAGAACTTGTACAAGTACCATAAAAGAACCAAAGAAGGCCGGAGTGGAAAACCCGACGGCAAGACTTATCGGTTTTTTGACCAGTTACAAGCCCTTGAAAATCAACCGCCTCCTTCCATTTTCCATACAACTACTATTACTACAACAACTACTACTACTACGCCTCATGATAATACACTATACCCTAAACCTCCACCTCAACAACCACAGGTGCCACCCCCACCTCCTCCTCCTTCTACGGTGGCGGCACCACCTAACCCTCAAACACTTCCTCTCATTAATCCTGGTACTGCTACTGCTCCATCAACTTCACCTCAACCTATGCCCAGCATCCTCACTACACTACCTTCATTTCCACAACCTAACAACCATGTAATTTTTGCACGGCCACCGCAACAGACGGCAACACCACCGGCCACAACCTCAAACCTTACAAATTCTTTCCAGCCAAGCAGTACTGTTCCGGTCCCGCCCTTTACTTTCGCAAACATTTCTACTGATCTTATTTCAAATTCCACCTCCTCTAACTGCTCGACGTCATCGGACGGGGAATTATCAGAAGGGCCGGGTATCAGACGAACCAGGAAGCGGAAATGGAAGGAATTTTTTGGGAGACTAATGAAGGAGGTGATTCAGAAGCAAGAGGATTTGCAGAAGAGATTCCTCGAAGCCATAGAGAAACGCGAGCATGAACGGATGGCACGAGAAGAGGCTTGGAGATTGCAGGAAATGGCCAAACTCAACAGAGAGCGCGAAATTCTAGCCCAAGAAAGATCAATGGCTGCCGCTAAGGATGCGGCCGTAATGGCATTTTTGCAAAAAGTAGCCGATCAACAGCCGAACCACAACCCGTCCGATCAGGTCCAAATCAAAATTCCGTTACAACCACCTCCACAGCCAGCGCCAGCATCATCTTCTCAAGCGGCAACACCACAATCGGACCCACCACCTCCTCCACGATTCACAACTATTACTCATGTACTACCACAACAGAATATTACAGTTACAAGAGATCATCATGAAGTTCCAAATAAAGGCGATCATGATAATTTCATGATGATATCGACGATTAGCTCCTCAAGATGGCCAAAAGTGGAGGTTCAAGCATTGATCAAGTTACGTGCTGATCTCGACACCAAGTATCAAGAGAACGGGCCGAAGGGCCTACTGTGGGAGGAGATCTCAACCGCAATGAAAAACCTAGGCTACAACAGGAATGCCAAAAGATGCAAAGAGAAATGGGAGAACATCAACAAGTACTTCAAGAAAGTGAAGGAGAGCAATAAGAAACGACCCGAGGATTCAAAGACCTGCCCGTATTTTCACCAGCTGGACGCATTATACAAGGAGAAGAACAAGCTGTTTGAGAGTAGTACTGCTGCTTCATCTAATAATCAAAGTAACAATTCATTGGCGGCTGCTCCAATGATGGTTCGGCCCGAGCAGCAATGGCCTCCGCAGCAAGAGATTGCCCGGCCCGAGTCGGGCAATGAGGATATGGAGAGTGAGGCATTAATGGATCAACAGCATGGAGACGGAGAAAAAGATGTTGATGATGATAGTGATGGGAGTCATAATGAGGAGGAGGAGCAAGAAGAAGATGAGGGTGGTGGACATTATGAGATAGTGGCTAGCAAACCAGGTAATTCTTCAGTGGGCCCTGAGTGA | 2031 | 47.96 | MLGESGSCVLGSSVDAVEVSATSHHQHDGSSEGGNCGGAASSSAEEDITRGGGGGGGERIRGDFGGNRWPRQETLALLKIRSDMDVAFRDASAKGPLWDEVSRKLAELGYHRNAKKCKEKFENLYKYHKRTKEGRSGKPDGKTYRFFDQLQALENQPPPSIFHTTTITTTTTTTTPHDNTLYPKPPPQQPQVPPPPPPPSTVAAPPNPQTLPLINPGTATAPSTSPQPMPSILTTLPSFPQPNNHVIFARPPQQTATPPATTSNLTNSFQPSSTVPVPPFTFANISTDLISNSTSSNCSTSSDGELSEGPGIRRTRKRKWKEFFGRLMKEVIQKQEDLQKRFLEAIEKREHERMAREEAWRLQEMAKLNREREILAQERSMAAAKDAAVMAFLQKVADQQPNHNPSDQVQIKIPLQPPPQPAPASSSQAATPQSDPPPPPRFTTITHVLPQQNITVTRDHHEVPNKGDHDNFMMISTISSSRWPKVEVQALIKLRADLDTKYQENGPKGLLWEEISTAMKNLGYNRNAKRCKEKWENINKYFKKVKESNKKRPEDSKTCPYFHQLDALYKEKNKLFESSTAASSNNQSNNSLAAAPMMVRPEQQWPPQQEIARPESGNEDMESEALMDQQHGDGEKDVDDDSDGSHNEEEEQEEDEGGGHYEIVASKPGNSSVGPE | 676 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 10239024 | 10242084 | + | Conep07aG0148800.1 | Cone7ag1446 | 442042 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone7ag1446 | 676 | Pfam | Myb/SANT-like DNA-binding domain | 481 | 568 | IPR044822 | - | |
Cone7ag1446 | 676 | Pfam | Myb/SANT-like DNA-binding domain | 67 | 153 | IPR044822 | - | |
Cone7ag1446 | 676 | MobiDBLite | consensus disorder prediction | 19 | 67 | - | - | |
Cone7ag1446 | 676 | MobiDBLite | consensus disorder prediction | 19 | 38 | - | - | |
Cone7ag1446 | 676 | PANTHER | FI21293P1 | 35 | 614 | - | - | |
Cone7ag1446 | 676 | MobiDBLite | consensus disorder prediction | 170 | 239 | - | - | |
Cone7ag1446 | 676 | MobiDBLite | consensus disorder prediction | 292 | 306 | - | - | |
Cone7ag1446 | 676 | MobiDBLite | consensus disorder prediction | 213 | 239 | - | - | |
Cone7ag1446 | 676 | CDD | GT1 | 481 | 546 | - | - | |
Cone7ag1446 | 676 | MobiDBLite | consensus disorder prediction | 615 | 641 | - | - | |
Cone7ag1446 | 676 | MobiDBLite | consensus disorder prediction | 399 | 442 | - | - | |
Cone7ag1446 | 676 | Coils | Coil | 365 | 385 | - | - | |
Cone7ag1446 | 676 | CDD | GT1 | 67 | 132 | - | - | |
Cone7ag1446 | 676 | ProSiteProfiles | Myb-like domain profile. | 61 | 125 | IPR001005 | - | |
Cone7ag1446 | 676 | MobiDBLite | consensus disorder prediction | 292 | 313 | - | - | |
Cone7ag1446 | 676 | MobiDBLite | consensus disorder prediction | 602 | 676 | - | - | |
Cone7ag1446 | 676 | MobiDBLite | consensus disorder prediction | 642 | 657 | - | - | |
Cone7ag1446 | 676 | MobiDBLite | consensus disorder prediction | 180 | 212 | - | - | |
Cone7ag1446 | 676 | Gene3D | - | 69 | 130 | - | - | |
Cone7ag1446 | 676 | Gene3D | - | 483 | 544 | - | - | |
Cone7ag1446 | 676 | FunFam | Trihelix transcription factor GT-2 | 483 | 544 | - | - | |
Cone7ag1446 | 676 | ProSiteProfiles | Myb-like domain profile. | 475 | 539 | IPR001005 | - | |
Cone7ag1446 | 676 | FunFam | Trihelix transcription factor GT-2 | 69 | 130 | - | - | |
Cone7ag1446 | 676 | PRINTS | Proline rich extensin signature | 219 | 231 | - | - | |
Cone7ag1446 | 676 | PRINTS | Proline rich extensin signature | 251 | 272 | - | - | |
Cone7ag1446 | 676 | PRINTS | Proline rich extensin signature | 190 | 206 | - | - | |
Cone7ag1446 | 676 | PRINTS | Proline rich extensin signature | 175 | 187 | - | - | |
Cone7ag1446 | 676 | PRINTS | Proline rich extensin signature | 412 | 437 | - | - | |
Cone7ag1446 | 676 | SMART | sant | 65 | 127 | IPR001005 | - | |
Cone7ag1446 | 676 | SMART | sant | 479 | 541 | IPR001005 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone16ag0970 | Cone-Chr16:9673740 | Cone7ag1446 | Cone-Chr7:10239024 | 9.31E-09 | dispersed | |
Cone4ag1502 | Cone-Chr4:11686614 | Cone7ag1446 | Cone-Chr7:10239024 | 4.19E-286 | dispersed | |
Cone7ag1446 | Cone-Chr7:10239024 | Cone8ag0052 | Cone-Chr8:272598 | 8.25E-119 | dispersed | |
Cone7ag1446 | Cone-Chr7:10239024 | Cone7ag1447 | Cone-Chr7:10247382 | 2.78E-116 | tandem | |
Cone12ag0048 | Cone-Chr12:281499 | Cone7ag1446 | Cone-Chr7:10239024 | 7.27E-120 | wgd | |
Cone4ag1501 | Cone-Chr4:11681355 | Cone7ag1446 | Cone-Chr7:10239024 | 2.97E-123 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
46562 | PF06728 | PIG-U | 5.50E-113 | CL0111 | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone7ag1446 | - | - | - | 0.0 |