Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone7ag1448 | ATGTCATTCCGAAGTATAATCCGTGATGTAAGAGATGGGTTTGGAAGCTTATCAGGAAGAAGTTTTGAGGTGAGGCTATCTGGCCACCACAAGGGTAAATCTCATGGATCGGTACATGAGTTACATGACCCGAATCTGATAGTCCAGACGAGCAATTGGGCTAACCTTCCACCTGAACTATTGCAAGATGTAATAAAAAGACTTGAGGCAAGCGAAAGTACATGGCCAGCTAGAAAACATGTCGTAGCTTGTGCTGCTGTTTGTTGGTCTTGGAGAGAAATGTGCAAAGAAATTGTCAGAAATCCAGAGATTTCCGGAAAGATTACCTTTCCTGTCTCCTTGAAACAGCCAGGGCCAAGGGATGGAACCATTCAGTGCTTCATTAAGAGGGATAAATCTAATTTGACTTACCATCTTTTCCTTTGCCTTAGCCCTGCTTTGCTTGTTGAGAATGGGAAATTCCTTCTTTCTGCAAAACGAACAAGGAGAACTACTTGCACTGAGTATGTTATCTCCATGGATGCTGATAACATATCAAGATCAAGCAGCACTTACATTGGTAAACTAAGGTCAAATTTTCTAGGCACGAAATTCATCGTTTACGACACACAACCTCCCTACAACAACTCCAACATATCTCCACCTGGCAGAAGCCATAGATTCCACTCGAAAAAAGTATCCCCCAGAGTACCCACAGGGAATTACAGCATTGCCCAAATCATGTACGAGTTGAATGTCCTTGGGACGAGGGGACCACGCAGGATGCACTGCACCATGCACTCCATCCCAGCCTCAGCTGTGGAGCCAAATGGCACTGTTCCAGGCCAGACCGACCTCCTCCCTCGACCCCTACTTGAGGACTCGTTCCGAAGTATCTCCTTCTCGAAATCTGTTGATCACTCAACAGAATTTAGCAGTTCTAGATTCTCTGACACTGTCGGCTTGCATGATGAGGAACAAGAAGGGAAGGAGGAGACAAGACCGTTGATTCTTCGGAACAAGGCACCTAGGTGGCACGAGCAGTTGCAGTGTTGGTGTCTTAATTTCCGAGGTAGAGTGACTATTGCTTCCATTAAGAACTTTCAGTTGATAGCTGCAACAACAGCAGCAGCACAGATGTCTACGGCTCAACCTGCCCAACCTGCTGCCCAACCCGCTGCCCCAACCGACCATGACAAGATTATTCTTCAGTTTGGTAAGGTCGGGAGAGATATGTTCACCATGGATTATAGGTATCCTTTGTCAGCATTTCAGGCCTTTGCTATCTGTTTGAGCAGCTTTGATACAAAATTGGCATGTGAGTAG | 1305 | 45.82 | MSFRSIIRDVRDGFGSLSGRSFEVRLSGHHKGKSHGSVHELHDPNLIVQTSNWANLPPELLQDVIKRLEASESTWPARKHVVACAAVCWSWREMCKEIVRNPEISGKITFPVSLKQPGPRDGTIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYVISMDADNISRSSSTYIGKLRSNFLGTKFIVYDTQPPYNNSNISPPGRSHRFHSKKVSPRVPTGNYSIAQIMYELNVLGTRGPRRMHCTMHSIPASAVEPNGTVPGQTDLLPRPLLEDSFRSISFSKSVDHSTEFSSSRFSDTVGLHDEEQEGKEETRPLILRNKAPRWHEQLQCWCLNFRGRVTIASIKNFQLIAATTAAAQMSTAQPAQPAAQPAAPTDHDKIILQFGKVGRDMFTMDYRYPLSAFQAFAICLSSFDTKLACE | 434 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 10255177 | 10258398 | + | Conep07aG0149000.1 | Cone7ag1448 | 442044 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone7ag1448 | 434 | CDD | F-box_AtTLP-like | 53 | 97 | - | - | |
Cone7ag1448 | 434 | ProSitePatterns | Tub family signature 2. | 419 | 434 | IPR018066 | - | |
Cone7ag1448 | 434 | Gene3D | Tubby Protein; Chain A | 110 | 434 | IPR025659 | - | |
Cone7ag1448 | 434 | PRINTS | Tubby superfamily signature | 349 | 365 | IPR000007 | - | |
Cone7ag1448 | 434 | PRINTS | Tubby superfamily signature | 331 | 348 | IPR000007 | - | |
Cone7ag1448 | 434 | PRINTS | Tubby superfamily signature | 391 | 410 | IPR000007 | - | |
Cone7ag1448 | 434 | PRINTS | Tubby superfamily signature | 234 | 261 | IPR000007 | - | |
Cone7ag1448 | 434 | PRINTS | Tubby superfamily signature | 185 | 209 | IPR000007 | - | |
Cone7ag1448 | 434 | PRINTS | Tubby superfamily signature | 412 | 434 | IPR000007 | - | |
Cone7ag1448 | 434 | PRINTS | Tubby superfamily signature | 169 | 185 | IPR000007 | - | |
Cone7ag1448 | 434 | PANTHER | TUBBY-RELATED | 39 | 433 | - | - | |
Cone7ag1448 | 434 | Pfam | F-box-like | 53 | 96 | IPR001810 | GO:0005515(InterPro) | |
Cone7ag1448 | 434 | FunFam | Tubby-like F-box protein | 110 | 434 | - | - | |
Cone7ag1448 | 434 | Pfam | Tub family | 114 | 429 | IPR000007 | - | |
Cone7ag1448 | 434 | SUPERFAMILY | F-box domain | 49 | 97 | IPR036047 | GO:0005515(InterPro) | |
Cone7ag1448 | 434 | SUPERFAMILY | Tubby C-terminal domain-like | 102 | 434 | IPR025659 | - | |
Cone7ag1448 | 434 | FunFam | Tubby-like F-box protein | 48 | 101 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone12ag0937 | Cone-Chr12:8169180 | Cone7ag1448 | Cone-Chr7:10255177 | 4.03E-236 | dispersed | |
Cone17ag0479 | Cone-Chr17:2307427 | Cone7ag1448 | Cone-Chr7:10255177 | 1.61E-147 | dispersed | |
Cone4ag0175 | Cone-Chr4:819037 | Cone7ag1448 | Cone-Chr7:10255177 | 1.56E-148 | dispersed | |
Cone4ag1918 | Cone-Chr4:13616392 | Cone7ag1448 | Cone-Chr7:10255177 | 2.33E-148 | dispersed | |
Cone7ag1448 | Cone-Chr7:10255177 | Cone8ag0970 | Cone-Chr8:9140265 | 3.26E-233 | dispersed | |
Cone17ag0784 | Cone-Chr17:6042285 | Cone7ag1448 | Cone-Chr7:10255177 | 5.53E-237 | wgd | |
Cone20ag0378 | Cone-Chr20:1761994 | Cone7ag1448 | Cone-Chr7:10255177 | 5.11E-237 | wgd | |
Cone4ag1499 | Cone-Chr4:11673097 | Cone7ag1448 | Cone-Chr7:10255177 | 9.63E-273 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
46564 | PF06728 | PIG-U | 6.00E-89 | CL0111 | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone7ag1448 | K19600 | - | vvi:100246937 | 715.687 |