Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1448 ATGTCATTCCGAAGTATAATCCGTGATGTAAGAGATGGGTTTGGAAGCTTATCAGGAAGAAGTTTTGAGGTGAGGCTATCTGGCCACCACAAGGGTAAATCTCATGGATCGGTACATGAGTTACATGACCCGAATCTGATAGTCCAGACGAGCAATTGGGCTAACCTTCCACCTGAACTATTGCAAGATGTAATAAAAAGACTTGAGGCAAGCGAAAGTACATGGCCAGCTAGAAAACATGTCGTAGCTTGTGCTGCTGTTTGTTGGTCTTGGAGAGAAATGTGCAAAGAAATTGTCAGAAATCCAGAGATTTCCGGAAAGATTACCTTTCCTGTCTCCTTGAAACAGCCAGGGCCAAGGGATGGAACCATTCAGTGCTTCATTAAGAGGGATAAATCTAATTTGACTTACCATCTTTTCCTTTGCCTTAGCCCTGCTTTGCTTGTTGAGAATGGGAAATTCCTTCTTTCTGCAAAACGAACAAGGAGAACTACTTGCACTGAGTATGTTATCTCCATGGATGCTGATAACATATCAAGATCAAGCAGCACTTACATTGGTAAACTAAGGTCAAATTTTCTAGGCACGAAATTCATCGTTTACGACACACAACCTCCCTACAACAACTCCAACATATCTCCACCTGGCAGAAGCCATAGATTCCACTCGAAAAAAGTATCCCCCAGAGTACCCACAGGGAATTACAGCATTGCCCAAATCATGTACGAGTTGAATGTCCTTGGGACGAGGGGACCACGCAGGATGCACTGCACCATGCACTCCATCCCAGCCTCAGCTGTGGAGCCAAATGGCACTGTTCCAGGCCAGACCGACCTCCTCCCTCGACCCCTACTTGAGGACTCGTTCCGAAGTATCTCCTTCTCGAAATCTGTTGATCACTCAACAGAATTTAGCAGTTCTAGATTCTCTGACACTGTCGGCTTGCATGATGAGGAACAAGAAGGGAAGGAGGAGACAAGACCGTTGATTCTTCGGAACAAGGCACCTAGGTGGCACGAGCAGTTGCAGTGTTGGTGTCTTAATTTCCGAGGTAGAGTGACTATTGCTTCCATTAAGAACTTTCAGTTGATAGCTGCAACAACAGCAGCAGCACAGATGTCTACGGCTCAACCTGCCCAACCTGCTGCCCAACCCGCTGCCCCAACCGACCATGACAAGATTATTCTTCAGTTTGGTAAGGTCGGGAGAGATATGTTCACCATGGATTATAGGTATCCTTTGTCAGCATTTCAGGCCTTTGCTATCTGTTTGAGCAGCTTTGATACAAAATTGGCATGTGAGTAG 1305 45.82 MSFRSIIRDVRDGFGSLSGRSFEVRLSGHHKGKSHGSVHELHDPNLIVQTSNWANLPPELLQDVIKRLEASESTWPARKHVVACAAVCWSWREMCKEIVRNPEISGKITFPVSLKQPGPRDGTIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYVISMDADNISRSSSTYIGKLRSNFLGTKFIVYDTQPPYNNSNISPPGRSHRFHSKKVSPRVPTGNYSIAQIMYELNVLGTRGPRRMHCTMHSIPASAVEPNGTVPGQTDLLPRPLLEDSFRSISFSKSVDHSTEFSSSRFSDTVGLHDEEQEGKEETRPLILRNKAPRWHEQLQCWCLNFRGRVTIASIKNFQLIAATTAAAQMSTAQPAQPAAQPAAPTDHDKIILQFGKVGRDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10255177 10258398 + Conep07aG0149000.1 Cone7ag1448 442044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1448 434 CDD F-box_AtTLP-like 53 97 - -
Cone7ag1448 434 ProSitePatterns Tub family signature 2. 419 434 IPR018066 -
Cone7ag1448 434 Gene3D Tubby Protein; Chain A 110 434 IPR025659 -
Cone7ag1448 434 PRINTS Tubby superfamily signature 349 365 IPR000007 -
Cone7ag1448 434 PRINTS Tubby superfamily signature 331 348 IPR000007 -
Cone7ag1448 434 PRINTS Tubby superfamily signature 391 410 IPR000007 -
Cone7ag1448 434 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Cone7ag1448 434 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Cone7ag1448 434 PRINTS Tubby superfamily signature 412 434 IPR000007 -
Cone7ag1448 434 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Cone7ag1448 434 PANTHER TUBBY-RELATED 39 433 - -
Cone7ag1448 434 Pfam F-box-like 53 96 IPR001810 GO:0005515(InterPro)
Cone7ag1448 434 FunFam Tubby-like F-box protein 110 434 - -
Cone7ag1448 434 Pfam Tub family 114 429 IPR000007 -
Cone7ag1448 434 SUPERFAMILY F-box domain 49 97 IPR036047 GO:0005515(InterPro)
Cone7ag1448 434 SUPERFAMILY Tubby C-terminal domain-like 102 434 IPR025659 -
Cone7ag1448 434 FunFam Tubby-like F-box protein 48 101 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0937 Cone-Chr12:8169180 Cone7ag1448 Cone-Chr7:10255177 4.03E-236 dispersed
Cone17ag0479 Cone-Chr17:2307427 Cone7ag1448 Cone-Chr7:10255177 1.61E-147 dispersed
Cone4ag0175 Cone-Chr4:819037 Cone7ag1448 Cone-Chr7:10255177 1.56E-148 dispersed
Cone4ag1918 Cone-Chr4:13616392 Cone7ag1448 Cone-Chr7:10255177 2.33E-148 dispersed
Cone7ag1448 Cone-Chr7:10255177 Cone8ag0970 Cone-Chr8:9140265 3.26E-233 dispersed
Cone17ag0784 Cone-Chr17:6042285 Cone7ag1448 Cone-Chr7:10255177 5.53E-237 wgd
Cone20ag0378 Cone-Chr20:1761994 Cone7ag1448 Cone-Chr7:10255177 5.11E-237 wgd
Cone4ag1499 Cone-Chr4:11673097 Cone7ag1448 Cone-Chr7:10255177 9.63E-273 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46564 PF06728 PIG-U 6.00E-89 CL0111 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1448 K19600 - vvi:100246937 715.687