Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1450 ATGGCGTCGTCCAAGTTGATGTCGTCGTCAAATTCGAGAAATTCGGATCCACCTCGACGTTTTTCATCTTCTTTTTCATCTAGAAAACAACCTCAATCTAGCATAGATCATATCAAAACTAGTAATAGTGATTATGACCATCTGGTCAATAGGAATTTTAGTAATCTTGCCACCTCGATGACCGTCGACGGTCTTCTCCGCAATGTCTACGATTCTCCTCCAGCCGCCGAATCCACTCTCTTAGACGCGCAGATAAACCTGATCGACACCCCCAATCCGTCTTCCTTCCCCTCCGCCGCCGTCACTACTGATACCTCCGCTCCCATCGATAACAGTACCAACACCTCGTCCTGGGCTGCTCAAAGAACAGTGGACAATGTTTGGATGGATATCGTCTCCGGCGAGGGAAAGGAGTTAAAGGAGGGGACTCTCGATGAGATGATGACGCTCGAGGATTTTCTCACCAAAGCTGGAGTTGTTGACGTCGTGGACGTCAAGATGCCACTTCAAACAGAGAGGCTGAGCGGAGGTGTTTTTTCTTTTGACCCGATGCCTCAGAGTCCTTTCCAGGCGCTTGAGAAGGTTGAGAGAGCGATAATAGGGTTTGGAAATGGAGCTGAGGTGATCGGAAGTGAAGGAGAGGGAGGAGGAAGAGGGAGAGCGAAGAGAGAGGCAGTTGTTTTGGAGCCGTTCGATAAAGCTGCTGTGCAGCGACAGAAGAGGATGATTAAGAACAGAGATTCCGCTGCCAGGTCCAGAGAGAGGAAGCAGGCTTACCAAGTTGAATTGGAGTCTTTATCCGTGAAGCTGGAGAAAGAAAATGCTCAGTTAACGAGGGAGAAGGATGCGAGGAGGAAGGAAAGCTAA 867 49.13 MASSKLMSSSNSRNSDPPRRFSSSFSSRKQPQSSIDHIKTSNSDYDHLVNRNFSNLATSMTVDGLLRNVYDSPPAAESTLLDAQINLIDTPNPSSFPSAAVTTDTSAPIDNSTNTSSWAAQRTVDNVWMDIVSGEGKELKEGTLDEMMTLEDFLTKAGVVDVVDVKMPLQTERLSGGVFSFDPMPQSPFQALEKVERAIIGFGNGAEVIGSEGEGGGRGRAKREAVVLEPFDKAAVQRQKRMIKNRDSAARSRERKQAYQVELESLSVKLEKENAQLTREKDARRKES 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10259165 10261185 - Conep07aG0149200.1 Cone7ag1450 442046

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1450 288 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 235 288 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag1450 288 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 54 282 IPR043452 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0045893(InterPro)
Cone7ag1450 288 CDD bZIP_plant_BZIP46 237 279 - -
Cone7ag1450 288 Coils Coil 249 287 - -
Cone7ag1450 288 SUPERFAMILY Leucine zipper domain 237 286 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag1450 288 Gene3D - 236 287 - -
Cone7ag1450 288 SMART brlzneu 233 288 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag1450 288 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 240 255 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag1450 288 MobiDBLite consensus disorder prediction 1 40 - -
Cone7ag1450 288 Pfam bZIP transcription factor 234 287 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1450 K14432 - - csv:101223110 245.743
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0938 Cone-Chr12:8173770 Cone7ag1450 Cone-Chr7:10259165 1.33E-27 dispersed
Cone7ag1450 Cone-Chr7:10259165 Cone8ag0972 Cone-Chr8:9148632 1.41E-24 dispersed
Cone4ag1498 Cone-Chr4:11671434 Cone7ag1450 Cone-Chr7:10259165 6.58E-109 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1370 Blo01g01730 . . Bda03g00393 Bpe02g00211 Bpe04g00355 Bma04g00371 Bma01g02509 Cmo04g02568 Cmo15g00598 . . Car01g00864 . . . . . . . . . . . . . . . . . . Cone4ag1498 Cone7ag1450 . . . . . . . . Bda11g00872 . . . . . . . . . . Car04g02360 Car15g00550 Cpe01g02120 . . . . . . . . . . . . . . . . . Chy03g00502 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003827 2 1 1 2 2 1 2 0 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 6 1 44
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46565 None None None None Cone TF