Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone7ag1458 | ATGGATACTAAAGGGCGGCTGATTGCTGGATCTCACAACAGAAACGAGTTCGTTCTCATCAATGCCGATGAGGTAGCTCGAGTGACCTCTGTGAAAGAACTAAGTGGGCAGATATGTCAGATCTGTGGAGATGAGATAGAAATCACTGTAGATGGTGAGCCCTTTGTCGCTTGCAATGAATGTGCATTCCCTGTCTGTAGGCCTTGCTATGAGTATGAAAGAAGAGAAGGAAATCAAGCCTGTCCTCAATGCAAAACCAGGTACAAGCGCATCAAAGGCAGTCCTCGAGTCGAAGGGGATGAGGAAGAAGAAGACATTGATGATTTGGAGAATGAATTTGATATCTCTTCCAAAGATGGTCACCTCTATGGTGTTTCCACGCTCCCACCTCACCTCACTGTGGGTGGGAATCATATGTATCACACAGGACTTGATCCCTCTTCTGCTGCTCCTACTGATATTCCTCTCCTCACTTATGGCCAAGAGGATGCCGGGATTTCTGCTGATAAGCATGCTCTGATTATCCCACCTTTTATGAGCCGTGGGAAACGGGTTCATCCTATACCCTTTAACGACACTGCTTCCATGTCTGGTGTTCAACCAAGGCCGATGGATCCTAAAAAGGATTTGGCGGTGTATGGGTACGGAACTGTCGCATGGAAGGAAAGAATGGAGGAGTGGAAGAAGAAGCAGAATGAGAAACTTCAGGTGGTTAGGCATGAAGGAGGAGGTGGAGATGGAAAGAATGATGATGACTTTGATGATCCTGATTTGCCCATGATGGATGAAGCTAGACAGCCACTTTCAAGAAAGTTGCCAATTTCTTCAAGCAGGATAAATCCTTATCGAATGATAATTGTACTCCGAATAGTGATTCTTGCCCTTTTTTTCCATTATCGAATCCTCCATCCTGTACATGATGCTTACGGATTATGGTTGACCTCGGTTATCTGTGAGATATGGTTTGCTGTCTCATGGATTTTGGATCAGTTCCCTAAATGGTGCCCAATTGAGCGAGAAACTTACCTTGATCGCTTGTCATTGAGGTATGATAAAGAAGGGAAGCCATCTGAGTTAGCCAGTCTGGACATTTTTGTCAGTACGGTGGATCCTATGAAGGAGCCGCCACTTATTACTGCTAATACGGTCCTTTCGATCCTGGCTGTTGATTATCCGGTGGATAAGGTTTCTTGCTATGTTTCTGATGATGGTGCTGCTATGCTTACTTTTGAGGCTCTCTCTGAAACATCCGAGTTTGCGAGGAAGTGGGTCCCCTTCTGTAAGAAGTTCAATATTGAACCGCGGGCCCCGGAATGGTATTTCGCTCAGAAGGTTGACTATTTAAAGGATAAAGTTGAACCAGTATTTGTCAGGGAAAGACGAGCAATGAAGAGGGAGTATGAAGAATTCAAAGTCCGAATCAACGGGCTAGTTGCTATGGCGCAGAAGGTTCCGGAAGATGGTTGGACAATGCAAGATGGAACTCCATGGCCTGGGAATTTGGTGAGAGATCATCCTGGCATGATTCAGGTTTTCCTTGGTGAGAATGGTGTCAGGGACCTAGAAGGAAACAAATTACCCACCCTCGTGTATGTTTCTCGTGAGAAGAGACCAGGATTTGACCACCATAAGAAAGCCGGTGCCATGAATTCTCTGGTGAGAGTCTCTGCAATCATCTCAAATGCTCCTTACATACTGAATGTGGATTGTGATCACTACATCAACAATAGTAAGGCGCTAAGGGAAGCTATGTGCTTTATGATGGACCCCATTTCTGGAAAGAAAATTTGCTACGTCCAATTTCCTCAAAGATTTGATGGCATTGATCGACACGATAGATACTCAAATCGTAATGTTGTATTCTTTGATATCAATATGAAAGGTTTAGATGGAATTCAAGGGCCAATTTATGTCGGAACTGGGTGTGTCTTTAGAAGGCAGGCACTATATGGATATGATGCCCCTGCCAAGAAGAAAACCCCAAGAAAGACTTGTAATTGTTGGCCTAGATGGTGTTGTTTTTGTTGCGGATCTCGAAAGAAGACTAAGAAAGTTAAATCCAGTGAGAAGAAGAGGTTGAAGAACAAGGATGGCTCAAAGCAGATTCATGCTCTAGAAAATATTGAAGAAGGAATAGATAGTGAAAAGTCATCTCTAATGCCCCAAATTAAGTTCGAGAAGAAATTCGGGCAATCCCCAGCATTTATAGCTTCAACTCTTATGGAAGATGGGGGCATTCCATCAGGAGCAACTTCTGCTTCGCTCTTGAAAGAAGCTATCCATGTTATCAGTTGTGGTTATGAAGACAAATCAGAATGGGGAAAAGAGGTTGGATGGATTTACGGCTCTGTTACAGAGGATATTTTAACAGGCTTCAAAATGCATTGCCATGGATGGCGATCAGTTTACTGTATACCCAAAAGACCCGCATTTAAAGGTTCAGCTCCTATCAATCTCTCAGACCGTCTCCACCAGGTTCTTCGGTGGGCCCTGGGATCAGTCGAGATTCTCTTGAGCAGGCACTGTCCGATCTGGTATGGCTATGGCTGTGGCTTGAAGTGGCTTGAGCGATTCTCTTACATAAACTCTGTTGTCTATCCCTTGACCTCTATTCCCTTGATCGCCTATTGTACCCTCCCTGCTGTTTGCCTCCTCACCGGAGAGTTCATCGTCCCTGAGCTAAGCAACTATGCGAGTATAATTTTCATGGCCCTTTTCATATCCATAGCAGCAACTGGTATCCTCGAAATGCAATGGGGAAAGGTGGGAATCCATGATTGGTGGAGGAATGAGCAGTTTTGGGTGATAGGAGGTGTTTCTGCTCACCTCTTCGCCTTATTCCAAGGTTTGCTTAAAGTCTTAGCCGGAGTTAACACAAACTTTACTGTCACATCTAAAGCGGCAGATGATGGGGAGTTTTCCGAGCTCTACCTCTTCAAATGGACATCCCTTTTGATTGCACCCATGACCTTACTAATCATAAACATCATCGGAGTTGTTGTTGGTGTCTCCGACGCTATCAATAATGGGTACGATTCGTGGGGTCCGCTCATTGGTAAGCTGTTCTTTGCCTTCTGGGTCATTGTCCATTTGTATCCGTTCCTCAAGGGTTTGATGGGAAAACAAGACAAGGTTCCCACCATTCTAATCGTGTGGTCTATTCTTCTTTCCTCTATATTCTCGCTCTTGTGGGTCCGAATCAACCCGTTCCTGGCTAGAGGTGGGATTGTATTAGAGGTTTGTGGGCTGAACTGTGACAATGATTAA | 3267 | 44.66 | MDTKGRLIAGSHNRNEFVLINADEVARVTSVKELSGQICQICGDEIEITVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRVEGDEEEEDIDDLENEFDISSKDGHLYGVSTLPPHLTVGGNHMYHTGLDPSSAAPTDIPLLTYGQEDAGISADKHALIIPPFMSRGKRVHPIPFNDTASMSGVQPRPMDPKKDLAVYGYGTVAWKERMEEWKKKQNEKLQVVRHEGGGGDGKNDDDFDDPDLPMMDEARQPLSRKLPISSSRINPYRMIIVLRIVILALFFHYRILHPVHDAYGLWLTSVICEIWFAVSWILDQFPKWCPIERETYLDRLSLRYDKEGKPSELASLDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEWYFAQKVDYLKDKVEPVFVRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNLVRDHPGMIQVFLGENGVRDLEGNKLPTLVYVSREKRPGFDHHKKAGAMNSLVRVSAIISNAPYILNVDCDHYINNSKALREAMCFMMDPISGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPAKKKTPRKTCNCWPRWCCFCCGSRKKTKKVKSSEKKRLKNKDGSKQIHALENIEEGIDSEKSSLMPQIKFEKKFGQSPAFIASTLMEDGGIPSGATSASLLKEAIHVISCGYEDKSEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEILLSRHCPIWYGYGCGLKWLERFSYINSVVYPLTSIPLIAYCTLPAVCLLTGEFIVPELSNYASIIFMALFISIAATGILEMQWGKVGIHDWWRNEQFWVIGGVSAHLFALFQGLLKVLAGVNTNFTVTSKAADDGEFSELYLFKWTSLLIAPMTLLIINIIGVVVGVSDAINNGYDSWGPLIGKLFFAFWVIVHLYPFLKGLMGKQDKVPTILIVWSILLSSIFSLLWVRINPFLARGGIVLEVCGLNCDND | 1088 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 10292094 | 10297657 | + | Conep07aG0150000.1 | Cone7ag1458 | 442054 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone7ag1458 | 1088 | FunFam | Cellulose synthase | 21 | 112 | - | - | |
Cone7ag1458 | 1088 | Pfam | Cellulose synthase | 362 | 1073 | IPR005150 | GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro) | |
Cone7ag1458 | 1088 | ProSiteProfiles | Zinc finger RING-type profile. | 39 | 85 | IPR001841 | - | |
Cone7ag1458 | 1088 | Gene3D | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 510 | 656 | IPR029044 | - | |
Cone7ag1458 | 1088 | Coils | Coil | 99 | 119 | - | - | |
Cone7ag1458 | 1088 | SUPERFAMILY | Nucleotide-diphospho-sugar transferases | 375 | 884 | IPR029044 | - | |
Cone7ag1458 | 1088 | MobiDBLite | consensus disorder prediction | 238 | 260 | - | - | |
Cone7ag1458 | 1088 | CDD | mRING-HC-C4C4_CesA | 37 | 87 | - | - | |
Cone7ag1458 | 1088 | PANTHER | X-BOX TRANSCRIPTION FACTOR-RELATED | 274 | 1055 | - | GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER) | |
Cone7ag1458 | 1088 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 22 | 112 | IPR013083 | - | |
Cone7ag1458 | 1088 | FunFam | Cellulose synthase | 479 | 653 | - | - | |
Cone7ag1458 | 1088 | SUPERFAMILY | RING/U-box | 28 | 107 | - | - | |
Cone7ag1458 | 1088 | Pfam | Zinc-binding RING-finger | 30 | 105 | IPR027934 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone7ag0557 | Cone-Chr7:2678513 | Cone7ag1458 | Cone-Chr7:10292094 | 0 | dispersed | |
Cone7ag1458 | Cone-Chr7:10292094 | Cone9ag1255 | Cone-Chr9:9240088 | 0 | dispersed | |
Cone4ag1486 | Cone-Chr4:11633123 | Cone7ag1458 | Cone-Chr7:10292094 | 0 | wgd | |
Cone6ag1303 | Cone-Chr6:10472077 | Cone7ag1458 | Cone-Chr7:10292094 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone7ag1458 | K10999 | - | csv:101214061 | 1964.12 |