Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1461 ATGGAACACGAGCATCTCGTGCCGCTAATGTTCCCTACGGAGCTTAGTCTGGACGGGGAGTTGTCTATGATCGTGTCAGCGCTGACAAGGGTGGTTTCAGGCAGCCAGACGAGTGGCTCTATTTCATTGGATTATTATGGTTCAGGGCAACCTTCTTATAATTCTTGTTCTTCTTCGTCACCTGATCTTTCTGGAGGCTATTCTTCTACCTCAGCAGGTTCATGGTCTGGTCAAAAAAGAGGACGAGAAGAAGAACAAAGTGAAAGCCATGTTCATAGATCAGGGCTTGCTTATAATTATTTCCAGCCTCATGCAATACCATCTGGTGCAATTGTGAAGCAAGAAGATTCAAATATTAATGCAACCAGCATCACCACCTCTTCCACAATTAATATGCTAACAAGAACAACATCAAGTGAAGCAGTTTCAAACGAACAAACAGGGCAGAGAAGAAAATACAGAGGAGTGAGGCAGAGACCATGGGGAAAATGGGCGGCTGAGATACGAGACCCACAGAAGGCGGCCAGAGTATGGCTCGGGACGTTCGACACCGCTGAAGCCGCTGCTAGAGCCTACGATGCGGCCGCGTTGAGATTCCGAGGCAGCAAAGCTAAGCTCAATTTCCCTGAAAATGTCACTTCTACCCTTTTACCAGCTCCAAGTAATTTCCACCCAACAGCACCATTATCCATTTCTCCACATTCTCCGGCCACCCCGTTCAACTTACAAGCTACACCTTTAAATCCGACTCCACCACCACCGGCATTGTTCGAGTCCCAAGGTTCTGGTAGTCTTAGAGATTACATGGAATATTCTCGGTTTCTTCAAAGCAGTGGAGATTTTCATGGTCAATCTCCAAGTTTGATGCAGCAAATGATGTATACTACACAGTTAAGAAATACCCTTTTGCAATCATCTTTACTCTCTTCTTCTCCATCATCATTTGCAAGCTCTGGTTCTTCCTCCTCTGTTTCATTACATCCTATGTTTTCATCTAATGAGCATCAGCAACTTGGCTATTTCCGGCCAGCAAGAAATCAGAATCCGAATGACACTAATGATTTATCGACACCACAGTGTACGGATTCCGGCCGTTATCCTCCCTCTTAA 1110 45.41 MEHEHLVPLMFPTELSLDGELSMIVSALTRVVSGSQTSGSISLDYYGSGQPSYNSCSSSSPDLSGGYSSTSAGSWSGQKRGREEEQSESHVHRSGLAYNYFQPHAIPSGAIVKQEDSNINATSITTSSTINMLTRTTSSEAVSNEQTGQRRKYRGVRQRPWGKWAAEIRDPQKAARVWLGTFDTAEAAARAYDAAALRFRGSKAKLNFPENVTSTLLPAPSNFHPTAPLSISPHSPATPFNLQATPLNPTPPPPALFESQGSGSLRDYMEYSRFLQSSGDFHGQSPSLMQQMMYTTQLRNTLLQSSLLSSSPSSFASSGSSSSVSLHPMFSSNEHQQLGYFRPARNQNPNDTNDLSTPQCTDSGRYPPS 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10308973 10310198 + Conep07aG0150300.1 Cone7ag1461 442057

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1461 369 MobiDBLite consensus disorder prediction 54 77 - -
Cone7ag1461 369 MobiDBLite consensus disorder prediction 309 328 - -
Cone7ag1461 369 PRINTS Ethylene responsive element binding protein signature 153 164 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag1461 369 PRINTS Ethylene responsive element binding protein signature 175 191 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag1461 369 MobiDBLite consensus disorder prediction 54 92 - -
Cone7ag1461 369 MobiDBLite consensus disorder prediction 334 363 - -
Cone7ag1461 369 SMART rav1_2 152 215 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag1461 369 MobiDBLite consensus disorder prediction 137 156 - -
Cone7ag1461 369 MobiDBLite consensus disorder prediction 334 369 - -
Cone7ag1461 369 CDD AP2 152 211 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag1461 369 FunFam Ethylene-responsive transcription factor 2 151 210 - -
Cone7ag1461 369 PANTHER DNA-BINDING DOMAIN 94 310 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Cone7ag1461 369 ProSiteProfiles AP2/ERF domain profile. 152 209 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag1461 369 SUPERFAMILY DNA-binding domain 152 210 IPR016177 GO:0003677(InterPro)
Cone7ag1461 369 Gene3D AP2/ERF domain 151 211 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag1461 369 Pfam AP2 domain 152 201 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1461 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0267 Cone-Chr13:1873790 Cone7ag1461 Cone-Chr7:10308973 9.88E-31 dispersed
Cone19ag0251 Cone-Chr19:1658840 Cone7ag1461 Cone-Chr7:10308973 5.47E-31 dispersed
Cone7ag0128 Cone-Chr7:540653 Cone7ag1461 Cone-Chr7:10308973 7.94E-25 dispersed
Cone7ag1461 Cone-Chr7:10308973 Cone9ag1320 Cone-Chr9:9921631 2.16E-25 dispersed
Cone9ag1335 Cone-Chr9:10025640 Cone7ag1461 Cone-Chr7:10308973 1.15E-20 dispersed
Cone12ag0059 Cone-Chr12:350392 Cone7ag1461 Cone-Chr7:10308973 1.09E-34 wgd
Cone17ag0776 Cone-Chr17:5888279 Cone7ag1461 Cone-Chr7:10308973 2.88E-58 wgd
Cone17ag0776 Cone-Chr17:5888279 Cone7ag1461 Cone-Chr7:10308973 2.88E-58 wgd
Cone20ag0368 Cone-Chr20:1675514 Cone7ag1461 Cone-Chr7:10308973 1.10E-61 wgd
Cone4ag1483 Cone-Chr4:11619194 Cone7ag1461 Cone-Chr7:10308973 1.60E-184 wgd
Cone6ag1305 Cone-Chr6:10495939 Cone7ag1461 Cone-Chr7:10308973 1.66E-30 wgd
Cone7ag1461 Cone-Chr7:10308973 Cone9ag1257 Cone-Chr9:9260150 1.05E-29 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1351 Blo01g01736 Blo12g00779 Bda01g00864 Bda03g00400 Bpe02g00207 Bpe04g00363 Bma04g00381 Bma01g02513 Cmo04g02571 Cmo15g00593 . . . . . . . Bhi04g02173 . . . . . . Cla08g00268 Cam08g0708 Cec08g0269 Cco08g0355 Clacu08g0418 . Cre08g0246 Cone4ag1483 Cone7ag1461 Cone17ag0776 Cone20ag0368 . . . Cme03g00299 Blo17g00139 Blo18g00150 Bda11g00867 Bda13g01423 Bpe02g01101 Bpe14g00434 . Bma02g00158 . . Cmo09g01245 . . Car04g02363 Car09g01066 . . . . . . . . . . . . . . . . Lsi08g00564 . Chy03g00496 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003344 4 0 4 4 4 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 1 49
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46566 PF00854 PTR2 2.90E-126 CL0015 Cone TF