Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1472 ATGAGTTATTCAAAGGGAAGAAGAAGAAGAAGAACTCTCGCCTTACTATTACTATGTCTGTTTTCTGTCTCAGTAGTACTGGTCACCTCTCTCTCACCTGATGGACAATCCCTTCTCTCACTCCTCTCATCAAAACCATCCTCCTCCTCTTCTTCTATTCTCGCATCATGGGACCCATCAAGCTCAACCCCATGTTCATGGCAAGGCATAACCTGTTCCCCACAAAACAGAGTAATCTCCCTGTCTCTTCCAAACACATTCCTAAACATCTCCTCTCTCCCTTCTCAACTCTTCTCCCTCTCCTCCCTCCAACTCCTCAACCTCTCCTCCACCAATATCTCTGGTAACATGCCCGCCTCCTTCGACCAACTCCCCCATCTCCGCCTCCTAGACCTGTCGTCTAACTCTCTCTACGGCCCCATCCCGCCTCAGCTCGGAGCACTCTCATCCCTCCAATTCCTCTTCCTCAATTTCAACCGCCTAACAGGAAAAATCCCGCATCAGCTCTCTAACCTCACTTCACTCCAAGTCCTCTGTCTTCAAGACAATCTCATCAATGGCTCCCTCCCGTCTCAACTCGGTTCCTTACTTTCTCTACAACAGCTTAGAATAGGAGGCAATCCTTACCTAACAGGGGAGATTCCATTTCAACTAGGACAGCTTACTAATCTCACCACATTTGGAGCAGCAGCCACTGGCCTTTCCGGCACGATCCCCCCAACTTTTGGGAACTTGATATATCTCCAAACACTTGCTGTTTATGATACGGACATTTTTGGAACTATACCCTCTGAACTTGGATCATGTTCCGAATTAAGGAACCTTTATTTGCATATGAACAAACTTACTGGGCCGATCCCGGTCCAATTGGGTAAGTTGCAAAAGCTTACGAGTTTGCTTCTTTGGGGCAATGCACTGTCCGGCCCAATCCCAGATGAGATTTCCAACTGCTCCTCTCTTGTTGTACTTGACGTTTCTTCAAACGATCTTTCGGGTGAAATCCCAGGCGATTTAGGGAAGTTGGATGCTCTAGAAGAACTGCATTTATCGGATAATTTGCTCGTGGGGACCATTCCAACGCACTTGAGTAACTGCACTAGTCTGACCACTCTTCAGCTCGACAAGAATCAGTTATCCGGTTCGATCCCATGGCAAGTCGGTAATTTGAAAAACTTACAGAGTTTTTTCCTGTGGGGTAACTCGGTTACTGGCATTGTACCGTCTGCATTCGGTAACTGCAGCGAACTTTACGCGCTCGATCTTTCTCTGAACAAGCTGACAGGGTCAATCCCGGATGAAATTTTCAGCTTGACGAAACTAAGCAAGCTTCTGCTTTTAGGGAATTCTTTGTCCGGAGGGCTTCCGAAAAGTGTTGCTAATTGTCAATCACTAGTAAGATTAAGACTGGGAGAAAACCGGCTTTCCGGTCAGGTTCCCAAAGAGATAGGTCAACTCCAGAATCTAGTGTTTCTCGACTTGTACATGAACCGTTTTTCGGGTAACCTTCCATCCGAGATTGCCAACATTACGATTCTCGAGCTGTTAGATTTGCACGACAATTATCTAACAGGGGAGATACCATCTCAGCTTGGGGAGCTTGTCAATTTAGAATTGCTTGATCTAAGTGGAAACAGCTTCAAAGGTGAAATCCCTTCGACTTTTGGTAATTTCAGTTACTTGAGCAAGCTTATGATCAACAATAATCAGTTGACCGGGACCATTCCGAAGTCAATTCAGAACTCACAGAAGTTGACTCTTCTTGACTTGAGCTATAACAACCTTTCTGGCCCGATTCCAACCGAAATCGGCTATGTCAAAAGTTTGACTATCAGTCTCGATTTGAGTTCAAATTTGTTCTCCGGAGAAATCCCCGAGTCAATGTCTGGTTTAACACAATTACAATCACTTGATATTTCCCATAACATGCTTTCTGGGGAAATCCGAGTCTTAACCTCCTTGACTAGTCTAGCTTCCCTTAATATCTCATATAACAATTTCATGGGGCCTATTCCCGTAACGCCATTTTTTCGAACTCTCTCATCGAATTCATTCCTTGAGAATCCGAATCTTTGCGAATCTTTCGATGGATCCACTTGTTCTTCTAGCCTAAAGAGGAAAAACGGGCTGACGTCTGCCAAAACCGTAGCTTTGATAACTGTCATTCTTGTTTTGGTTATCATTATAGTTCTTGTTGCATGGATTATAGCTACGAGGAGATGTGAATACATGGTGAGGTCTTCAAGAACAACATCATCCTCTTCGGGAAAAGCGGGTGAAGACTTCTCTTATCCATGGACTTTCATCCCTTTCCAAAAACTCAACTTCACCATAGACAACATCTTAGAATGCCTGAAAGATGAAAATGTGATAGGAAAAGGTTGTTCAGGGTGTGTCTACAAGGCAGAAATACCTAACGGGGAATTGATTGCAGTGAAAAAGCTTTGGAAAACGAAGCAAGATGAAGAACATCCTATAGACTCATTTGGGGCCGAAATTGAAATTCTGGGTCATATTAGGCACCGGAACATAGTGAAGCTACTAGGATACTGTTCGAACAAAAGCGTCAAGCTCCTTCTCTACAACTACATTTCAAATGGAAATCTACAACAACTATTGCTAGGGAATAGGAACTTGGATTGGGAAACTAGGTATAAGATAGCTATTGGCTCCGCTCAGGGTCTAGCTTATCTGCATCACGATTGTGTCCCGACAATTCTTCATCGAGACGTCAAGTGCAATAACATTCTTCTAGATTCAAAGTTTGAGGCTTATCTTGCCGATTTCGGTCTGGCAAAGCTTATGAACACTCCGAGTTATCAGCATGCCATGTCAAGAGTAGCTGGGTCCTATGGCTATATTGCCCCAGAGTATGGATACACCACAAACATAACGGAGAAGAGTGATGTATATAGTTATGGAGTTGTTCTGCTAGAGATACTAAGCGGAAGAAGTGCGGTGGGGCTGCAAGTAGGAGATGGGCTTCACATTGTGGAATGGGTGAAGAAGAAGATGGGGAGCTTTGAACCGGCCATATCAGTACTCGACACGAAGCTACAAGGATTAACGGATGAGATGGTGCAAGAGATGCTTCAAATGTTGGGGATAGCAATGTTTTGCGTGAACTCTTCACCGGCCGAACGGCCCACCATGAAAGAAGTGGTGGCATTGCTCTTGGAGATCAAAAGCCCACCTGAAGAATGGGGGAAGACTTCTCAACCATTAATAAAGCATTCTTTAAATGAAAGCTCATAA 3252 44.4 MSYSKGRRRRRTLALLLLCLFSVSVVLVTSLSPDGQSLLSLLSSKPSSSSSSILASWDPSSSTPCSWQGITCSPQNRVISLSLPNTFLNISSLPSQLFSLSSLQLLNLSSTNISGNMPASFDQLPHLRLLDLSSNSLYGPIPPQLGALSSLQFLFLNFNRLTGKIPHQLSNLTSLQVLCLQDNLINGSLPSQLGSLLSLQQLRIGGNPYLTGEIPFQLGQLTNLTTFGAAATGLSGTIPPTFGNLIYLQTLAVYDTDIFGTIPSELGSCSELRNLYLHMNKLTGPIPVQLGKLQKLTSLLLWGNALSGPIPDEISNCSSLVVLDVSSNDLSGEIPGDLGKLDALEELHLSDNLLVGTIPTHLSNCTSLTTLQLDKNQLSGSIPWQVGNLKNLQSFFLWGNSVTGIVPSAFGNCSELYALDLSLNKLTGSIPDEIFSLTKLSKLLLLGNSLSGGLPKSVANCQSLVRLRLGENRLSGQVPKEIGQLQNLVFLDLYMNRFSGNLPSEIANITILELLDLHDNYLTGEIPSQLGELVNLELLDLSGNSFKGEIPSTFGNFSYLSKLMINNNQLTGTIPKSIQNSQKLTLLDLSYNNLSGPIPTEIGYVKSLTISLDLSSNLFSGEIPESMSGLTQLQSLDISHNMLSGEIRVLTSLTSLASLNISYNNFMGPIPVTPFFRTLSSNSFLENPNLCESFDGSTCSSSLKRKNGLTSAKTVALITVILVLVIIIVLVAWIIATRRCEYMVRSSRTTSSSSGKAGEDFSYPWTFIPFQKLNFTIDNILECLKDENVIGKGCSGCVYKAEIPNGELIAVKKLWKTKQDEEHPIDSFGAEIEILGHIRHRNIVKLLGYCSNKSVKLLLYNYISNGNLQQLLLGNRNLDWETRYKIAIGSAQGLAYLHHDCVPTILHRDVKCNNILLDSKFEAYLADFGLAKLMNTPSYQHAMSRVAGSYGYIAPEYGYTTNITEKSDVYSYGVVLLEILSGRSAVGLQVGDGLHIVEWVKKKMGSFEPAISVLDTKLQGLTDEMVQEMLQMLGIAMFCVNSSPAERPTMKEVVALLLEIKSPPEEWGKTSQPLIKHSLNESS 1083
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10357304 10361124 + Conep07aG0151400.1 Cone7ag1472 442068

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1472 1083 SMART LRR_typ_2 124 148 IPR003591 -
Cone7ag1472 1083 SMART LRR_typ_2 533 556 IPR003591 -
Cone7ag1472 1083 SMART LRR_typ_2 293 317 IPR003591 -
Cone7ag1472 1083 SMART LRR_typ_2 341 365 IPR003591 -
Cone7ag1472 1083 SMART LRR_typ_2 172 196 IPR003591 -
Cone7ag1472 1083 SMART LRR_typ_2 100 123 IPR003591 -
Cone7ag1472 1083 SMART LRR_typ_2 630 660 IPR003591 -
Cone7ag1472 1083 SMART LRR_typ_2 389 412 IPR003591 -
Cone7ag1472 1083 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 765 862 - -
Cone7ag1472 1083 SMART LRR_sd22_2 533 562 - -
Cone7ag1472 1083 SMART LRR_sd22_2 630 658 - -
Cone7ag1472 1083 SMART LRR_sd22_2 341 367 - -
Cone7ag1472 1083 SMART LRR_sd22_2 148 174 - -
Cone7ag1472 1083 SMART serkin_6 784 1061 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone7ag1472 1083 Pfam Leucine rich repeat N-terminal domain 32 73 IPR013210 -
Cone7ag1472 1083 SUPERFAMILY L domain-like 61 401 - -
Cone7ag1472 1083 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 433 703 - -
Cone7ag1472 1083 ProSiteProfiles Leucine-rich repeat profile. 632 654 IPR001611 GO:0005515(InterPro)
Cone7ag1472 1083 SUPERFAMILY Protein kinase-like (PK-like) 766 1058 IPR011009 -
Cone7ag1472 1083 Gene3D Transferase(Phosphotransferase) domain 1 863 1072 - -
Cone7ag1472 1083 Gene3D Ribonuclease Inhibitor 449 701 IPR032675 -
Cone7ag1472 1083 ProSitePatterns Serine/Threonine protein kinases active-site signature. 905 917 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone7ag1472 1083 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 863 1075 - -
Cone7ag1472 1083 Gene3D Ribonuclease Inhibitor 210 448 IPR032675 -
Cone7ag1472 1083 Pfam Protein kinase domain 786 1054 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone7ag1472 1083 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 435 1062 IPR051564 GO:0016020(PANTHER)
Cone7ag1472 1083 Gene3D Ribonuclease Inhibitor 31 209 IPR032675 -
Cone7ag1472 1083 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 208 431 - -
Cone7ag1472 1083 Pfam Leucine rich repeat 391 450 IPR001611 GO:0005515(InterPro)
Cone7ag1472 1083 Pfam Leucine rich repeat 89 137 IPR001611 GO:0005515(InterPro)
Cone7ag1472 1083 ProSitePatterns Protein kinases ATP-binding region signature. 790 813 IPR017441 GO:0005524(InterPro)
Cone7ag1472 1083 SUPERFAMILY L domain-like 380 700 - -
Cone7ag1472 1083 FunFam Nuclear pore complex protein NUP107 32 191 - -
Cone7ag1472 1083 Gene3D Phosphorylase Kinase; domain 1 751 862 - -
Cone7ag1472 1083 PRINTS Leucine-rich repeat signature 630 643 - -
Cone7ag1472 1083 PRINTS Leucine-rich repeat signature 584 597 - -
Cone7ag1472 1083 ProSiteProfiles Protein kinase domain profile. 784 1075 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone7ag1472 1083 Pfam Leucine Rich Repeat 583 603 IPR001611 GO:0005515(InterPro)
Cone7ag1472 1083 Pfam Leucine Rich Repeat 535 557 IPR001611 GO:0005515(InterPro)
Cone7ag1472 1083 Pfam Leucine Rich Repeat 319 341 IPR001611 GO:0005515(InterPro)
Cone7ag1472 1083 Pfam Leucine Rich Repeat 512 533 IPR001611 GO:0005515(InterPro)
Cone7ag1472 1083 Pfam Leucine Rich Repeat 344 365 IPR001611 GO:0005515(InterPro)
Cone7ag1472 1083 Pfam Leucine Rich Repeat 150 172 IPR001611 GO:0005515(InterPro)
Cone7ag1472 1083 Pfam Leucine Rich Repeat 560 580 IPR001611 GO:0005515(InterPro)
Cone7ag1472 1083 Pfam Leucine Rich Repeat 295 317 IPR001611 GO:0005515(InterPro)
Cone7ag1472 1083 Pfam Leucine Rich Repeat 487 508 IPR001611 GO:0005515(InterPro)
Cone7ag1472 1083 Pfam Leucine Rich Repeat 367 389 IPR001611 GO:0005515(InterPro)
Cone7ag1472 1083 Pfam Leucine Rich Repeat 611 630 IPR001611 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1472 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1513 Cone-Chr4:11756834 Cone7ag1472 Cone-Chr7:10357304 5.61E-95 dispersed
Cone7ag1472 Cone-Chr7:10357304 Cone9ag1418 Cone-Chr9:10516382 1.67E-93 dispersed
Cone4ag1465 Cone-Chr4:11560328 Cone7ag1472 Cone-Chr7:10357304 2.87E-40 transposed
Cone17ag0766 Cone-Chr17:5805973 Cone7ag1472 Cone-Chr7:10357304 3.63E-159 wgd
Cone20ag0356 Cone-Chr20:1593832 Cone7ag1472 Cone-Chr7:10357304 2.47E-202 wgd
Cone4ag1464 Cone-Chr4:11559360 Cone7ag1472 Cone-Chr7:10357304 1.88E-153 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1230 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone7ag1472 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83063 PF00538 Linker_histone 1.70E-09 CL0123 Cone PK