Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1475 ATGGCGACGGCGATTCAGGCACCGATGGCTCAGGCTAACGTATCGGCGGCGGCGGTGATGAATCAACCACCAGCAGTGGTGACCGGAGGATTTGGCAATGCATCGCTGTACGTGGGAGATTTGGACAAGAATGTGAATGAGGAACAACTCCTCGAACTGTTTGGCCAGGTCGGAACGGTGACCTCTGTTAGGGTTTGTAAGGATCAGTCCCGCGGGAAATCACTTGGCTATGCCTACGTCAATTACGCCAGCCCTCAGGAAGCTTCCAATGCCATGGAGATGTTGAATTTCACTTCTATTCATGGGAAGCCGATCAGGATTATGTTTTCTTATCGAGATCCGAGCCTTCGAAAAAGTGGATATGCCAATGTCTTTATCAAGAATCTAGACACCTCAATTGATAACAAGGCATTGCATGATTCTTTTTCAGTCTTTGGAACTATCCTTTCATGTAAGGTAGCTGTTGATAGGAATGGTCAATCAAAAGGGTACGGGTTTGTGCAATTTGGAAATGAAGAATCTGCACAGAATGCCATTAAACGGCTGAATGGGATGCTGTTGAATGACAAACAAGTTTATGTTGGACTTTTTGTTAGGCGTCAGGAAAGGAATGAAGCCAATGGACCGCCTAGATTTAATAATGTTTACGTCAAGAATTTGCCTGAAGAAATTACAGATGAGGACCTTAAGATGCTTTTTGGATCTTATGGTACTATTACTAGCGCTGTTGTTATGCGGGACTCGGATGGGAAATCTCGACACTTTGGATTTGTGAGCTTTGAGGATTCAGAGGCGGCTGCTACTGCAGTTGAGAAGTTGAATGGGACCACAATTGGCGAGGAAAATGTTCTGTATGTTGGTAGGGCCCAGAAGAAAGGGGAGAGAGAGGCAGAGTTGAGATCCAAATTTGAACAGGAAAGGATCAGTAGATATGAAAAGTTACAAGGTGCTAATTTATACGTTAAGAATCTGGAAGATAATATTACAGATGAGAATCTGAAGGAACTTTTTTCTGAGTTTGGAACAATTACATCATGCAAGGTCATGTTTGATCAGCATGGGCACAGCAAGGGCTGTGGTTTTGTGGCCTTCTCTTCACCAGAAGAAGCAACAAGAGCTCTGAATAGCATGAATAATAAGATGGTGGGGCAGAAACCTTTGTATGTTGCCGTTGCCCAGAGCAGAGAAGAGAGAAAGGCTCGCCTGCAGGCACAGTTTTCTCAATTCAGAGCACCTGGTGTGGTCCCGCCCTTCTCTTCTGGGGTCCACGGATTTCACCCTGGTACACCTAGAGTTGGTCCTCAACAACTCTATTATGGTCAAGGAGCAGCTGGCCTTATTCCCCCTCAGCCTGCTGGTTTTGGCTTCCAACCTGGACTCCTGCCAGGAATGAGGCCTGGTGTTGCTCCAAATTTTCTAATGCCTTATCAGCTTCAGAGGCAAGGTCAGCACGGGCAGCGCCTGGATATTAGACGAGGTGGCAACCACCCTCAGCACATGCATCAGCAACAGTTTCTGCAGCACAACTCAGGTCAAGGCTTAAGGTACATAGGCAACCCAAGGAAAGGTCTAGACCCATCAGCTGTTCCACAAGGTGTGATCGGCCCAATGCTGCCTTCTTTGGGCTATTCTGGGCCCCGAATTCCTACCTCCCCTAATGACACCCAACGATCCCGGCCCTTACCTACGTCCACACTGGCCTCTGCATTAGCTTCCGCCACTCCAGAGGACCAACGCATGATGTTAGGGGAGCAACTATATCCCCTTGTGGCCCGTGTTGAGCTGAGCAATGCTGCAAAAGTGACAGGGATGTTGCTCGAGATGGATCAACCTGAGGTTCTTCATCTCATAGAATCTCCAGATGCTCTGAAGATTAAGGTGGCTGAGGCGATGGAAGTGCTTAAGAAAGCTGCCGGTGCAGAATCAGAGGTCTCCAATCAGCTCAGTTCATTGGCACTTGATGAGTGA 1968 47.61 MATAIQAPMAQANVSAAAVMNQPPAVVTGGFGNASLYVGDLDKNVNEEQLLELFGQVGTVTSVRVCKDQSRGKSLGYAYVNYASPQEASNAMEMLNFTSIHGKPIRIMFSYRDPSLRKSGYANVFIKNLDTSIDNKALHDSFSVFGTILSCKVAVDRNGQSKGYGFVQFGNEESAQNAIKRLNGMLLNDKQVYVGLFVRRQERNEANGPPRFNNVYVKNLPEEITDEDLKMLFGSYGTITSAVVMRDSDGKSRHFGFVSFEDSEAAATAVEKLNGTTIGEENVLYVGRAQKKGEREAELRSKFEQERISRYEKLQGANLYVKNLEDNITDENLKELFSEFGTITSCKVMFDQHGHSKGCGFVAFSSPEEATRALNSMNNKMVGQKPLYVAVAQSREERKARLQAQFSQFRAPGVVPPFSSGVHGFHPGTPRVGPQQLYYGQGAAGLIPPQPAGFGFQPGLLPGMRPGVAPNFLMPYQLQRQGQHGQRLDIRRGGNHPQHMHQQQFLQHNSGQGLRYIGNPRKGLDPSAVPQGVIGPMLPSLGYSGPRIPTSPNDTQRSRPLPTSTLASALASATPEDQRMMLGEQLYPLVARVELSNAAKVTGMLLEMDQPEVLHLIESPDALKIKVAEAMEVLKKAAGAESEVSNQLSSLALDE 655
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10366037 10369128 - Conep07aG0151700.1 Cone7ag1475 442071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1475 655 SMART poly_2 574 637 IPR002004 GO:0003723(InterPro)
Cone7ag1475 655 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 122 199 IPR000504 GO:0003723(InterPro)
Cone7ag1475 655 Pfam Poly-adenylate binding protein, unique domain 569 634 IPR002004 GO:0003723(InterPro)
Cone7ag1475 655 Gene3D - 116 202 IPR012677 -
Cone7ag1475 655 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 34 635 IPR006515 GO:0003723(InterPro)
Cone7ag1475 655 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 317 394 IPR000504 GO:0003723(InterPro)
Cone7ag1475 655 SMART rrm2_1 35 108 IPR003954 GO:0003676(InterPro)
Cone7ag1475 655 SMART rrm2_1 318 390 IPR003954 GO:0003676(InterPro)
Cone7ag1475 655 SMART rrm2_1 214 286 IPR003954 GO:0003676(InterPro)
Cone7ag1475 655 SMART rrm2_1 123 195 IPR003954 GO:0003676(InterPro)
Cone7ag1475 655 CDD RRM2_I_PABPs 120 195 IPR045305 -
Cone7ag1475 655 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 562 639 IPR002004 GO:0003723(InterPro)
Cone7ag1475 655 MobiDBLite consensus disorder prediction 540 561 - -
Cone7ag1475 655 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 112 IPR000504 GO:0003723(InterPro)
Cone7ag1475 655 PANTHER RNA BINDING PROTEIN 26 217 - GO:0003723(PANTHER)|GO:0003730(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0008143(PANTHER)|GO:0008266(PANTHER)|GO:1990904(PANTHER)
Cone7ag1475 655 MobiDBLite consensus disorder prediction 546 561 - -
Cone7ag1475 655 FunFam Polyadenylate-binding protein 123 196 - -
Cone7ag1475 655 CDD RRM3_I_PABPs 212 292 - -
Cone7ag1475 655 SUPERFAMILY PABC (PABP) domain 518 644 IPR036053 GO:0003723(InterPro)
Cone7ag1475 655 Gene3D - 203 303 IPR012677 -
Cone7ag1475 655 Gene3D - 304 406 IPR012677 -
Cone7ag1475 655 FunFam Polyadenylate-binding protein 10 117 - -
Cone7ag1475 655 SUPERFAMILY RNA-binding domain, RBD 313 413 IPR035979 GO:0003676(InterPro)
Cone7ag1475 655 Pfam RNA recognition motif 124 192 IPR000504 GO:0003723(InterPro)
Cone7ag1475 655 Pfam RNA recognition motif 36 106 IPR000504 GO:0003723(InterPro)
Cone7ag1475 655 Pfam RNA recognition motif 215 282 IPR000504 GO:0003723(InterPro)
Cone7ag1475 655 Pfam RNA recognition motif 319 387 IPR000504 GO:0003723(InterPro)
Cone7ag1475 655 CDD RRM4_I_PABPs 316 393 - -
Cone7ag1475 655 SUPERFAMILY RNA-binding domain, RBD 34 203 IPR035979 GO:0003676(InterPro)
Cone7ag1475 655 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 213 291 IPR000504 GO:0003723(InterPro)
Cone7ag1475 655 FunFam Polyadenylate-binding protein 558 640 - -
Cone7ag1475 655 Gene3D - 559 638 - -
Cone7ag1475 655 Gene3D - 19 115 IPR012677 -
Cone7ag1475 655 FunFam Polyadenylate-binding protein 300 405 - -
Cone7ag1475 655 SMART rrm1_1 35 108 IPR000504 GO:0003723(InterPro)
Cone7ag1475 655 SMART rrm1_1 318 390 IPR000504 GO:0003723(InterPro)
Cone7ag1475 655 SMART rrm1_1 123 195 IPR000504 GO:0003723(InterPro)
Cone7ag1475 655 SMART rrm1_1 214 287 IPR000504 GO:0003723(InterPro)
Cone7ag1475 655 SUPERFAMILY RNA-binding domain, RBD 208 307 IPR035979 GO:0003676(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag1535 Cone-Chr11:10749131 Cone7ag1475 Cone-Chr7:10366037 4.02E-08 dispersed
Cone14ag0626 Cone-Chr14:3137974 Cone7ag1475 Cone-Chr7:10366037 4.32E-11 dispersed
Cone18ag0061 Cone-Chr18:340002 Cone7ag1475 Cone-Chr7:10366037 7.47E-08 dispersed
Cone18ag1213 Cone-Chr18:8632171 Cone7ag1475 Cone-Chr7:10366037 7.00E-09 dispersed
Cone1ag0537 Cone-Chr1:5355679 Cone7ag1475 Cone-Chr7:10366037 2.26E-18 dispersed
Cone5ag1343 Cone-Chr5:8010716 Cone7ag1475 Cone-Chr7:10366037 2.75E-15 dispersed
Cone7ag1475 Cone-Chr7:10366037 Cone8ag1121 Cone-Chr8:9919319 1.34E-213 dispersed
Cone4ag1461 Cone-Chr4:11550661 Cone7ag1475 Cone-Chr7:10366037 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1475 K13126 - mdm:114824749 864.374