Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone7ag1475 | ATGGCGACGGCGATTCAGGCACCGATGGCTCAGGCTAACGTATCGGCGGCGGCGGTGATGAATCAACCACCAGCAGTGGTGACCGGAGGATTTGGCAATGCATCGCTGTACGTGGGAGATTTGGACAAGAATGTGAATGAGGAACAACTCCTCGAACTGTTTGGCCAGGTCGGAACGGTGACCTCTGTTAGGGTTTGTAAGGATCAGTCCCGCGGGAAATCACTTGGCTATGCCTACGTCAATTACGCCAGCCCTCAGGAAGCTTCCAATGCCATGGAGATGTTGAATTTCACTTCTATTCATGGGAAGCCGATCAGGATTATGTTTTCTTATCGAGATCCGAGCCTTCGAAAAAGTGGATATGCCAATGTCTTTATCAAGAATCTAGACACCTCAATTGATAACAAGGCATTGCATGATTCTTTTTCAGTCTTTGGAACTATCCTTTCATGTAAGGTAGCTGTTGATAGGAATGGTCAATCAAAAGGGTACGGGTTTGTGCAATTTGGAAATGAAGAATCTGCACAGAATGCCATTAAACGGCTGAATGGGATGCTGTTGAATGACAAACAAGTTTATGTTGGACTTTTTGTTAGGCGTCAGGAAAGGAATGAAGCCAATGGACCGCCTAGATTTAATAATGTTTACGTCAAGAATTTGCCTGAAGAAATTACAGATGAGGACCTTAAGATGCTTTTTGGATCTTATGGTACTATTACTAGCGCTGTTGTTATGCGGGACTCGGATGGGAAATCTCGACACTTTGGATTTGTGAGCTTTGAGGATTCAGAGGCGGCTGCTACTGCAGTTGAGAAGTTGAATGGGACCACAATTGGCGAGGAAAATGTTCTGTATGTTGGTAGGGCCCAGAAGAAAGGGGAGAGAGAGGCAGAGTTGAGATCCAAATTTGAACAGGAAAGGATCAGTAGATATGAAAAGTTACAAGGTGCTAATTTATACGTTAAGAATCTGGAAGATAATATTACAGATGAGAATCTGAAGGAACTTTTTTCTGAGTTTGGAACAATTACATCATGCAAGGTCATGTTTGATCAGCATGGGCACAGCAAGGGCTGTGGTTTTGTGGCCTTCTCTTCACCAGAAGAAGCAACAAGAGCTCTGAATAGCATGAATAATAAGATGGTGGGGCAGAAACCTTTGTATGTTGCCGTTGCCCAGAGCAGAGAAGAGAGAAAGGCTCGCCTGCAGGCACAGTTTTCTCAATTCAGAGCACCTGGTGTGGTCCCGCCCTTCTCTTCTGGGGTCCACGGATTTCACCCTGGTACACCTAGAGTTGGTCCTCAACAACTCTATTATGGTCAAGGAGCAGCTGGCCTTATTCCCCCTCAGCCTGCTGGTTTTGGCTTCCAACCTGGACTCCTGCCAGGAATGAGGCCTGGTGTTGCTCCAAATTTTCTAATGCCTTATCAGCTTCAGAGGCAAGGTCAGCACGGGCAGCGCCTGGATATTAGACGAGGTGGCAACCACCCTCAGCACATGCATCAGCAACAGTTTCTGCAGCACAACTCAGGTCAAGGCTTAAGGTACATAGGCAACCCAAGGAAAGGTCTAGACCCATCAGCTGTTCCACAAGGTGTGATCGGCCCAATGCTGCCTTCTTTGGGCTATTCTGGGCCCCGAATTCCTACCTCCCCTAATGACACCCAACGATCCCGGCCCTTACCTACGTCCACACTGGCCTCTGCATTAGCTTCCGCCACTCCAGAGGACCAACGCATGATGTTAGGGGAGCAACTATATCCCCTTGTGGCCCGTGTTGAGCTGAGCAATGCTGCAAAAGTGACAGGGATGTTGCTCGAGATGGATCAACCTGAGGTTCTTCATCTCATAGAATCTCCAGATGCTCTGAAGATTAAGGTGGCTGAGGCGATGGAAGTGCTTAAGAAAGCTGCCGGTGCAGAATCAGAGGTCTCCAATCAGCTCAGTTCATTGGCACTTGATGAGTGA | 1968 | 47.61 | MATAIQAPMAQANVSAAAVMNQPPAVVTGGFGNASLYVGDLDKNVNEEQLLELFGQVGTVTSVRVCKDQSRGKSLGYAYVNYASPQEASNAMEMLNFTSIHGKPIRIMFSYRDPSLRKSGYANVFIKNLDTSIDNKALHDSFSVFGTILSCKVAVDRNGQSKGYGFVQFGNEESAQNAIKRLNGMLLNDKQVYVGLFVRRQERNEANGPPRFNNVYVKNLPEEITDEDLKMLFGSYGTITSAVVMRDSDGKSRHFGFVSFEDSEAAATAVEKLNGTTIGEENVLYVGRAQKKGEREAELRSKFEQERISRYEKLQGANLYVKNLEDNITDENLKELFSEFGTITSCKVMFDQHGHSKGCGFVAFSSPEEATRALNSMNNKMVGQKPLYVAVAQSREERKARLQAQFSQFRAPGVVPPFSSGVHGFHPGTPRVGPQQLYYGQGAAGLIPPQPAGFGFQPGLLPGMRPGVAPNFLMPYQLQRQGQHGQRLDIRRGGNHPQHMHQQQFLQHNSGQGLRYIGNPRKGLDPSAVPQGVIGPMLPSLGYSGPRIPTSPNDTQRSRPLPTSTLASALASATPEDQRMMLGEQLYPLVARVELSNAAKVTGMLLEMDQPEVLHLIESPDALKIKVAEAMEVLKKAAGAESEVSNQLSSLALDE | 655 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 10366037 | 10369128 | - | Conep07aG0151700.1 | Cone7ag1475 | 442071 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone7ag1475 | 655 | SMART | poly_2 | 574 | 637 | IPR002004 | GO:0003723(InterPro) | |
Cone7ag1475 | 655 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 122 | 199 | IPR000504 | GO:0003723(InterPro) | |
Cone7ag1475 | 655 | Pfam | Poly-adenylate binding protein, unique domain | 569 | 634 | IPR002004 | GO:0003723(InterPro) | |
Cone7ag1475 | 655 | Gene3D | - | 116 | 202 | IPR012677 | - | |
Cone7ag1475 | 655 | NCBIfam | polyadenylate binding protein, human types 1, 2, 3, 4 family | 34 | 635 | IPR006515 | GO:0003723(InterPro) | |
Cone7ag1475 | 655 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 317 | 394 | IPR000504 | GO:0003723(InterPro) | |
Cone7ag1475 | 655 | SMART | rrm2_1 | 35 | 108 | IPR003954 | GO:0003676(InterPro) | |
Cone7ag1475 | 655 | SMART | rrm2_1 | 318 | 390 | IPR003954 | GO:0003676(InterPro) | |
Cone7ag1475 | 655 | SMART | rrm2_1 | 214 | 286 | IPR003954 | GO:0003676(InterPro) | |
Cone7ag1475 | 655 | SMART | rrm2_1 | 123 | 195 | IPR003954 | GO:0003676(InterPro) | |
Cone7ag1475 | 655 | CDD | RRM2_I_PABPs | 120 | 195 | IPR045305 | - | |
Cone7ag1475 | 655 | ProSiteProfiles | Poly(A)-binding protein C-terminal (PABC) domain profile. | 562 | 639 | IPR002004 | GO:0003723(InterPro) | |
Cone7ag1475 | 655 | MobiDBLite | consensus disorder prediction | 540 | 561 | - | - | |
Cone7ag1475 | 655 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 34 | 112 | IPR000504 | GO:0003723(InterPro) | |
Cone7ag1475 | 655 | PANTHER | RNA BINDING PROTEIN | 26 | 217 | - | GO:0003723(PANTHER)|GO:0003730(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0008143(PANTHER)|GO:0008266(PANTHER)|GO:1990904(PANTHER) | |
Cone7ag1475 | 655 | MobiDBLite | consensus disorder prediction | 546 | 561 | - | - | |
Cone7ag1475 | 655 | FunFam | Polyadenylate-binding protein | 123 | 196 | - | - | |
Cone7ag1475 | 655 | CDD | RRM3_I_PABPs | 212 | 292 | - | - | |
Cone7ag1475 | 655 | SUPERFAMILY | PABC (PABP) domain | 518 | 644 | IPR036053 | GO:0003723(InterPro) | |
Cone7ag1475 | 655 | Gene3D | - | 203 | 303 | IPR012677 | - | |
Cone7ag1475 | 655 | Gene3D | - | 304 | 406 | IPR012677 | - | |
Cone7ag1475 | 655 | FunFam | Polyadenylate-binding protein | 10 | 117 | - | - | |
Cone7ag1475 | 655 | SUPERFAMILY | RNA-binding domain, RBD | 313 | 413 | IPR035979 | GO:0003676(InterPro) | |
Cone7ag1475 | 655 | Pfam | RNA recognition motif | 124 | 192 | IPR000504 | GO:0003723(InterPro) | |
Cone7ag1475 | 655 | Pfam | RNA recognition motif | 36 | 106 | IPR000504 | GO:0003723(InterPro) | |
Cone7ag1475 | 655 | Pfam | RNA recognition motif | 215 | 282 | IPR000504 | GO:0003723(InterPro) | |
Cone7ag1475 | 655 | Pfam | RNA recognition motif | 319 | 387 | IPR000504 | GO:0003723(InterPro) | |
Cone7ag1475 | 655 | CDD | RRM4_I_PABPs | 316 | 393 | - | - | |
Cone7ag1475 | 655 | SUPERFAMILY | RNA-binding domain, RBD | 34 | 203 | IPR035979 | GO:0003676(InterPro) | |
Cone7ag1475 | 655 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 213 | 291 | IPR000504 | GO:0003723(InterPro) | |
Cone7ag1475 | 655 | FunFam | Polyadenylate-binding protein | 558 | 640 | - | - | |
Cone7ag1475 | 655 | Gene3D | - | 559 | 638 | - | - | |
Cone7ag1475 | 655 | Gene3D | - | 19 | 115 | IPR012677 | - | |
Cone7ag1475 | 655 | FunFam | Polyadenylate-binding protein | 300 | 405 | - | - | |
Cone7ag1475 | 655 | SMART | rrm1_1 | 35 | 108 | IPR000504 | GO:0003723(InterPro) | |
Cone7ag1475 | 655 | SMART | rrm1_1 | 318 | 390 | IPR000504 | GO:0003723(InterPro) | |
Cone7ag1475 | 655 | SMART | rrm1_1 | 123 | 195 | IPR000504 | GO:0003723(InterPro) | |
Cone7ag1475 | 655 | SMART | rrm1_1 | 214 | 287 | IPR000504 | GO:0003723(InterPro) | |
Cone7ag1475 | 655 | SUPERFAMILY | RNA-binding domain, RBD | 208 | 307 | IPR035979 | GO:0003676(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone11ag1535 | Cone-Chr11:10749131 | Cone7ag1475 | Cone-Chr7:10366037 | 4.02E-08 | dispersed | |
Cone14ag0626 | Cone-Chr14:3137974 | Cone7ag1475 | Cone-Chr7:10366037 | 4.32E-11 | dispersed | |
Cone18ag0061 | Cone-Chr18:340002 | Cone7ag1475 | Cone-Chr7:10366037 | 7.47E-08 | dispersed | |
Cone18ag1213 | Cone-Chr18:8632171 | Cone7ag1475 | Cone-Chr7:10366037 | 7.00E-09 | dispersed | |
Cone1ag0537 | Cone-Chr1:5355679 | Cone7ag1475 | Cone-Chr7:10366037 | 2.26E-18 | dispersed | |
Cone5ag1343 | Cone-Chr5:8010716 | Cone7ag1475 | Cone-Chr7:10366037 | 2.75E-15 | dispersed | |
Cone7ag1475 | Cone-Chr7:10366037 | Cone8ag1121 | Cone-Chr8:9919319 | 1.34E-213 | dispersed | |
Cone4ag1461 | Cone-Chr4:11550661 | Cone7ag1475 | Cone-Chr7:10366037 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone7ag1475 | K13126 | - | mdm:114824749 | 864.374 |