Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1481 ATGTCGCGGACGCTGGTGCAGCCGATAGGGCAGAAGAGGCTGACGAACGTGGCGGTGGTGCGTCTGAAGAAGCATGGAAATCGTTTCGAGATTGCCTGCTATAAGAACAAGGTTCTTTCATGGCGCTCTGGCGTAGAGAAAGATTTGGATGAAGTCTTGCAGTCACAGACAGTTTACTCAAATGTTTCGAAAGGAGTACTTGCCAAATCAAAAGATTTAGTGGCAGCCTTTGGAACTGATGATCAGACAAAAATTTGCTTGGAGATTTTAGATAAAGGTGAGCTTCAAGTGGCTGGAAAAGAGAGGGAATCGCAGTTATCAAGTCAGTTTCGGGATATTGCAACCATTGTCATGCAGAAGACCTTCAATCCTGAAACTCAACGCCCATACACTATTAGCATGATTGAGCGGCTTATGCATGAAATTCACTTTGCTGTTGATCCACATGGTAGCTCAAAGAAGCAGGCACTTGAGGTTATTCACGAGCTTCAGAAGCATTTCCCTATTAAACGTTCACCGATGAGAATACTATTTAGAGTCCCTGAGCAGAACATCTCTTCTCTTCTTGAGAAGATGAATGTCTGGAATGCCAGCATTATTTCAAATGAGCCATCTGGGAGTCAGCTATGTGTTATTTGTGAGGTAGATCCTAGCTTTTACAGAGAGTGTAATCCCTTGATGAGTGATCTGAACGGCAGGTTTGAAGTACTTTCATTTTCATTACACGAGGAAGGGGACACAATTGTGGATCGCTATGAAGATCATGAGCATGTTCCAAAAAAGAATGTGAAGGAGGAATCAAGGGATGTTGTGGCCCAGTTACGTGAAAAATTAGAAAAGCAGAGCATCGTGCTTAGTACCACTACTTCGGAGAGCCCTGGGCAAAGCATCACAACGAGTCGTGTTGGGAACAGTCAAGGAGAGGGAAAGCGTTGCAGCACCTGTAATGTTGTATTGGGGGATGACCCGATTCTGTTTAGAGAGCATCATAAGAGTGAATGGCACAAGCATAACGTGAAGCGCAAAACCAGGAAACTCCCTCCCTTGTGCGAAGAAGAGTGCAAGGTCGAAATAGAAGTGGGTGACTCAAATTCAGATTTGAAGGATTATAGTTTCTAG 1119 44.24 MSRTLVQPIGQKRLTNVAVVRLKKHGNRFEIACYKNKVLSWRSGVEKDLDEVLQSQTVYSNVSKGVLAKSKDLVAAFGTDDQTKICLEILDKGELQVAGKERESQLSSQFRDIATIVMQKTFNPETQRPYTISMIERLMHEIHFAVDPHGSSKKQALEVIHELQKHFPIKRSPMRILFRVPEQNISSLLEKMNVWNASIISNEPSGSQLCVICEVDPSFYRECNPLMSDLNGRFEVLSFSLHEEGDTIVDRYEDHEHVPKKNVKEESRDVVAQLREKLEKQSIVLSTTTSESPGQSITTSRVGNSQGEGKRCSTCNVVLGDDPILFREHHKSEWHKHNVKRKTRKLPPLCEEECKVEIEVGDSNSDLKDYSF 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10397910 10400258 - Conep07aG0152300.1 Cone7ag1481 442077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1481 372 FunFam SBDS, ribosome maturation factor 100 172 - -
Cone7ag1481 372 SUPERFAMILY Hypothetical protein AF0491, middle domain 98 171 IPR037188 -
Cone7ag1481 372 MobiDBLite consensus disorder prediction 285 311 - -
Cone7ag1481 372 PANTHER RIBOSOME MATURATION PROTEIN SBDS 1 246 IPR039100 -
Cone7ag1481 372 Gene3D - 100 172 IPR037188 -
Cone7ag1481 372 Pfam SBDS protein, domain II 111 171 IPR018978 GO:0042254(InterPro)
Cone7ag1481 372 NCBIfam ribosome assembly factor SBDS 13 229 IPR002140 GO:0042256(InterPro)
Cone7ag1481 372 Gene3D - 174 250 - -
Cone7ag1481 372 Gene3D - 1 96 IPR036786 -
Cone7ag1481 372 ProSitePatterns Uncharacterized protein family UPF0023 signature. 46 65 IPR018023 -
Cone7ag1481 372 Pfam SBDS protein, C-terminal domain 174 238 IPR046928 -
Cone7ag1481 372 Pfam Shwachman-Bodian-Diamond syndrome (SBDS) protein 16 102 IPR019783 -
Cone7ag1481 372 SUPERFAMILY FYSH domain 13 96 IPR036786 -
Cone7ag1481 372 SMART ZnF_U1_5 307 342 IPR003604 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone7ag1481 372 FunFam SBDS, ribosome maturation factor 3 96 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1451 Cone-Chr4:11509372 Cone7ag1481 Cone-Chr7:10397910 2.48E-252 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1481 K14574 - csv:101215380 534.258