Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1487 ATGGGAAGAAGAGAAACGGAGCTGAAGAAGAAGGCGCAGCTGAAGAAGAAGGCCAAATCTGGCGGCTTCGAGTCCTTAGCTCTCAGTCCCAATGTCTTCCGCGGAATCAAACGCAAGGGCTACCAGGTGCCAACCCCGATTCAGAGGAAGACCATGCCCATCATACTCTCCGGCGTCGACGTCGTCGCCATGGCTCGAACTGGTTCTGGTAAGACTGCCGCCTTTCTCATCCCCATGCTGCAGCGATTGAGTCAGCACGTCCCTCAAGGTGGAGTTAGGGCTCTTATTCTGTCCCCTTCTAGAGAATTAGCGCTTCAGACCCTCAAATTCACCAAGGAGCTCGGAAGATTCACAGATCTTCGAGTTAGTTTATTGGTGGGTGGTGAAAGCATGGAAAGCCAATTTGAAGAACTAGCACAGAATCCGGATATTGTAATAGCAACTCCCGGAAGGCTAATGCACCATTTGTCTGAGGTTGATGACATGTCTTTGCGTACAGTGGAATATGTTGTATTTGACGAAGCTGACCGCCTCTTTGAATCGGGTTTTAGTGAACAGCTGCATAAAATTCTTTCACAGTTGAGTGAAAATCGACAAACCTTGCTTTTCAGTGCAACATTACCTAGTGTTCTAGCCGAGTTTGCCAAGGCCGGTTTGCGTGATCCTCAGCTTGTTCGGCTTGATTTGGAGACTAAGATTAGCCCGGATTTGAAGCTTGTGTTTTTCACCTTAAGACAGGAAGAGAAGTATGCAGCACTATTATATTTGTTAAGGGAACAAATCACTTCTGATCAGCAGACGTTAATTTTTGTGGCTACAAAACATCATGTTGAGTTCCTCAATATCTTGTTTAGATTGGAAGGTATTGAGCCTTCTGTATGCTATGGTGAGATGGATCAAGATGCTCGCAAGATTCATATAGCAAGGTTTAGAGCAAGAAAAACAATGTCACTAATTGTGACTGATGTTGCAGCTAGAGGTATTGACATTCCATTACTTGATAATGTTATCAACTGGGACTTCCCTCCGAAGCCTAAAATATTTGTTCATCGAGTTGGCCGAGCTGCAAGGGCTGGTCGAACCGGTACTGCCTTTTCTTTTGTGACATCTGAAGATATGCCTTTCATGTTAGATCTGCATTTATTTCTCTCAAAACCGATCAGGGCTGCACCTTCTGAGGAGGAGCTTTTGACAGATAGGGATAGTGTATTGTCTAAAATGGAGCAAGCAATTGCAAACGGAGAAAGTGTCTATGGGCGTTTTCCCCAAACTGTCATCGACCTTGCATCAGATAGAATTCGAGAAACTATTGATTCTTCCGCTGATTTAACAGCATTGTTGAGTGCTTGTAAGAATGGGTTTCGTTTGTATTCAAAGACAAAGCCATCCCCTTCAAGGGAGTCCGTTAAAAGAGCAAAGGATCTACCCTGTGAAGGGCTGCATCCAATATTCAAAAATGTACTTGAAGGTGGTGAATTGATGGCATTGGCTTTCTCAGAGCGACTGAAAACATTTAGGCCCAAGCAGACTATTCTGGAAGCTGAAGGAGAAGCTGCTAAATCAAAACATGCTAAGGGTCCTTCAGGTCAATGGGTTGATGTTATGAAGAAAAAAAGATTCGTTCATGAAGAAATTATTAAATTAGTACAGCAGCAGCGCTCTGATAGCCAAGTAGAGAAGGAAGTCGAGCCTGAAATCACTTCTTCAAAGGACAAGGAGAAAAAAGCACGTGGATCAAAAAGAAAGATAGCGAGTTTCAAAGATGAAGAATACTTCATCAGCTCAGTCCCAACCAATCATCATATGGAAGCAGGACTTACTGTTAGAGGTGATCGAGGCTTTGGAACGAATAGGTTGGAAAGTGCTGTTCTAGACTTAGTTGCAGATGACAGTTCTGGAATGAAGAAGCAGAAATCTGTCTTTCATTGGGACAAGAGAAGTAAAAAGTACATCAAACTGAACAATGGTGAGCATGTGACAGCTAGCGGAAAGATTAAGACAGAGAGTGGTGCAAAATTAAAGACTAACAAGACGGGAATATACAAGAAATGGCAAGCACGGTCACACAATAAGATCTCGCTTAACGGGACAAATAGTGAAGGAAATGCTGATACCTCCATGAACAATCCAGGAGACAGGCGATTAACCGGATATAAGAGAAACTTCAAGGGAGGCAAGAAGCAGAACGAAGTTCCCAATTCTCATGTCCGGTCAGAAGTAAAAAATCTCGAACAGATTCGTAAAGAAAGGCAGAAGAAGGCTAGTAGAATGGCTCACACAAATAGCAAATCTAAAGCGAAGGGTAAAAATATGGGAAGGAAAGGAAAGAAAGGGAAGCCAAGGAAGTAA 2349 43.3 MGRRETELKKKAQLKKKAKSGGFESLALSPNVFRGIKRKGYQVPTPIQRKTMPIILSGVDVVAMARTGSGKTAAFLIPMLQRLSQHVPQGGVRALILSPSRELALQTLKFTKELGRFTDLRVSLLVGGESMESQFEELAQNPDIVIATPGRLMHHLSEVDDMSLRTVEYVVFDEADRLFESGFSEQLHKILSQLSENRQTLLFSATLPSVLAEFAKAGLRDPQLVRLDLETKISPDLKLVFFTLRQEEKYAALLYLLREQITSDQQTLIFVATKHHVEFLNILFRLEGIEPSVCYGEMDQDARKIHIARFRARKTMSLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMPFMLDLHLFLSKPIRAAPSEEELLTDRDSVLSKMEQAIANGESVYGRFPQTVIDLASDRIRETIDSSADLTALLSACKNGFRLYSKTKPSPSRESVKRAKDLPCEGLHPIFKNVLEGGELMALAFSERLKTFRPKQTILEAEGEAAKSKHAKGPSGQWVDVMKKKRFVHEEIIKLVQQQRSDSQVEKEVEPEITSSKDKEKKARGSKRKIASFKDEEYFISSVPTNHHMEAGLTVRGDRGFGTNRLESAVLDLVADDSSGMKKQKSVFHWDKRSKKYIKLNNGEHVTASGKIKTESGAKLKTNKTGIYKKWQARSHNKISLNGTNSEGNADTSMNNPGDRRLTGYKRNFKGGKKQNEVPNSHVRSEVKNLEQIRKERQKKASRMAHTNSKSKAKGKNMGRKGKKGKPRK 782
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10428834 10432971 + Conep07aG0153000.1 Cone7ag1487 442083

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1487 782 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 21 49 IPR014014 GO:0003724(InterPro)
Cone7ag1487 782 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 52 225 IPR014001 -
Cone7ag1487 782 Pfam DBP10CT (NUC160) domain 625 686 IPR012541 GO:0003723(InterPro)|GO:0003724(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)
Cone7ag1487 782 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 171 179 IPR000629 -
Cone7ag1487 782 MobiDBLite consensus disorder prediction 691 712 - -
Cone7ag1487 782 MobiDBLite consensus disorder prediction 691 782 - -
Cone7ag1487 782 Pfam DEAD/DEAH box helicase 45 213 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Cone7ag1487 782 CDD SF2_C_DEAD 237 368 - -
Cone7ag1487 782 SMART DBP10CT_2 625 687 IPR012541 GO:0003723(InterPro)|GO:0003724(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)
Cone7ag1487 782 MobiDBLite consensus disorder prediction 552 574 - -
Cone7ag1487 782 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 7 762 IPR050079 -
Cone7ag1487 782 SMART helicmild6 274 359 IPR001650 -
Cone7ag1487 782 MobiDBLite consensus disorder prediction 752 782 - -
Cone7ag1487 782 MobiDBLite consensus disorder prediction 552 581 - -
Cone7ag1487 782 Gene3D - 238 469 IPR027417 -
Cone7ag1487 782 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 249 398 IPR001650 -
Cone7ag1487 782 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 91 377 IPR027417 -
Cone7ag1487 782 CDD DEADc_DDX54 21 226 IPR033517 -
Cone7ag1487 782 MobiDBLite consensus disorder prediction 716 734 - -
Cone7ag1487 782 Gene3D - 2 228 IPR027417 -
Cone7ag1487 782 Pfam Helicase conserved C-terminal domain 249 359 IPR001650 -
Cone7ag1487 782 SMART ultradead3 40 240 IPR014001 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1487 K14808 - - rcu:8272106 1202.58
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag0973 Cone-Chr3:28297967 Cone7ag1487 Cone-Chr7:10428834 2.68E-34 dispersed
Cone7ag1487 Cone-Chr7:10428834 Cone9ag1154 Cone-Chr9:8196546 2.33E-59 dispersed
Cone7ag1487 Cone-Chr7:10428834 Cone5ag1511 Cone-Chr5:10256017 5.29E-70 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1179 . . . . . . Bma04g00302 . . . . . . . . . . . . . . . . . . . . . . . . . Cone7ag1487 . . . . . . Blo17g00228 . . Bda13g01542 . Bpe14g00323 . Bma02g00286 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009899 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 33