Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1489 ATGGGGAGTAATAGTAATCCCAAACGCTCGCCATCGCACGTGATTATCGCATGCGATGCGACTAGAGATCGCAGTGAACACGAGTTTAAGCTCACCATTGAAGCCGTCAAGATGAGGGGCGATATCCTTCATGCTGGTAGCAAGCTTGTTGTGCTTGGTGTTCTCGACAGGGTTCCTCATCCTATGGGATATCAGTTAAAAGCATGCCCTGAATCGTTTGCTGGAACTGTGGTTCGAGCTATGGAGGAAGAAGTTTCAAGGAGAGTTGATACTTATGTCAGCATGCTCATGCAAAGTGCTAACAAGTGTCAACATGAAGGGGTCAGCATTGAAGTCAAAGTGACAGCTGGATATCCAACTAAGCAGGTCGTTTTACAAGAGGTTGCGGCCTGTAACGCAAGTTGGATCATACTTGATCGGCACCTAAGACGCGATTTAGGGTACTACCTGAGACAGATACCTTGCAAGATTGCCTCAATCCATGACAGCTTAGCTGTAGAAGTAGAGAGACCACTTACTACATTTGAATCAGATGCTATAGAACAGAAGGTGTTCTACTCTGCATCCAAGTCTGTGCCTGTCCCTTCATTGGATTGGCAAGCCGTTGAAATCACTGACCATTCTCCTGTTATAAGCCGTCACAAAAGCTACCCATCATTATCCATGGCTTCCCAAAAAAGCTCTAGTTCCACGGTTTTCTCACATCCAACTTCTTCGCTGTCCTCTTCTAAGCAAGAAAAAGTAGGTACTTTAAGTAAAGGAGTGCATATGAATCATATGCCGGCTTTCAAATTAGTCAAAACTCAAAGCAAAAATTTTCTTCAACAAAGATCGTCGGAAGCTCCGATTCTCTGTTCGGCTTGTGGGACAAGGAGCGATTTGCATATAAAGGAATCATTGAGGTTTACTTACTCGGAAATTCAGGCTGCGACTAATGATTTTTCGAAGGAAAACTTGATAGGGGAAGGTGGATACGGTTACGTTTATAAGGGCGAGCTTAAAGACGGACATCATATTGCAGCCAAGGTAAGGAAAGAGACGAGCACGCAAGGTTTTTCCGAATTTAATTCCGAGGTTTTCGTACTAAGTTTTGCACGGCATAAGAACATCATGATGCTCTTGGGTTATTGCTGCAAGGAGAACCTTAATATCTTGGTCTATGAGTTTGTCTGCAATAATTCTCTTGAATGGCATTTATTTGACAGAGAGATAAAAACAGTTCTTGATTGGCACCAAAGACATGCTATTGCTGTTGGAACTGCAAAAGCACTCCGATTTCTACACGAAGAATGCCGTGGAGGTCCAATTATTCATAGGGATGTTAGACCGAGCAATATACTTCTCACACATGACTTTGTTCCTATGCTTGGTGACTTTGGCCTTGCGAAATGGAAGACTGGTGATGGTCCGTTACACACAAGGGTACTTGGCACACTTGGATATCTTGCTCCTGAATATGCAGAAGATGGGATTCTTTCAGTGAGAACAGATGTATATGCATTTGGCATTGTTCTGTTACAGCTTATAACGGGACGAAAGGTGATCAATACAGAAGGGGAAGAGCAACAACACCAATCTCTACGACAATGGGCTGAGCCGTTGATTCAGAACTTAGAATTACATGAATTGATCGATCCTCGTCTTGAGAAGGCTTACGACATGTACGAATTGTATCTCATGTCGAAGACAGCATTCTTATGTGCACAAAAAAATCCAGAGTTGCGGCCTTCAATGGGAGAGGTCGTGCGCCTTCTCGAAGGAGAAAGCGACCATTTCCGCTACTTGGAAGAGCAGTTTGTCCCTCATTTTCCAAAGTAA 1818 43.62 MGSNSNPKRSPSHVIIACDATRDRSEHEFKLTIEAVKMRGDILHAGSKLVVLGVLDRVPHPMGYQLKACPESFAGTVVRAMEEEVSRRVDTYVSMLMQSANKCQHEGVSIEVKVTAGYPTKQVVLQEVAACNASWIILDRHLRRDLGYYLRQIPCKIASIHDSLAVEVERPLTTFESDAIEQKVFYSASKSVPVPSLDWQAVEITDHSPVISRHKSYPSLSMASQKSSSSTVFSHPTSSLSSSKQEKVGTLSKGVHMNHMPAFKLVKTQSKNFLQQRSSEAPILCSACGTRSDLHIKESLRFTYSEIQAATNDFSKENLIGEGGYGYVYKGELKDGHHIAAKVRKETSTQGFSEFNSEVFVLSFARHKNIMMLLGYCCKENLNILVYEFVCNNSLEWHLFDREIKTVLDWHQRHAIAVGTAKALRFLHEECRGGPIIHRDVRPSNILLTHDFVPMLGDFGLAKWKTGDGPLHTRVLGTLGYLAPEYAEDGILSVRTDVYAFGIVLLQLITGRKVINTEGEEQQHQSLRQWAEPLIQNLELHELIDPRLEKAYDMYELYLMSKTAFLCAQKNPELRPSMGEVVRLLEGESDHFRYLEEQFVPHFPK 605
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10436979 10439861 - Conep07aG0153200.1 Cone7ag1489 442085

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1489 605 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 286 389 - -
Cone7ag1489 605 Gene3D HUPs 3 159 IPR014729 -
Cone7ag1489 605 ProSitePatterns Protein kinases ATP-binding region signature. 320 342 IPR017441 GO:0005524(InterPro)
Cone7ag1489 605 PANTHER OS01G0750732 PROTEIN 217 588 IPR050885 -
Cone7ag1489 605 SMART tyrkin_6 314 585 IPR020635 GO:0004713(InterPro)|GO:0006468(InterPro)
Cone7ag1489 605 SUPERFAMILY Protein kinase-like (PK-like) 298 587 IPR011009 -
Cone7ag1489 605 ProSiteProfiles Protein kinase domain profile. 314 594 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone7ag1489 605 CDD STKc_IRAK 320 587 - -
Cone7ag1489 605 ProSitePatterns Tyrosine protein kinases specific active-site signature. 436 448 IPR008266 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone7ag1489 605 Pfam Protein kinase domain 315 582 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone7ag1489 605 Gene3D Phosphorylase Kinase; domain 1 282 389 - -
Cone7ag1489 605 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 390 593 - -
Cone7ag1489 605 Gene3D Transferase(Phosphotransferase) domain 1 391 598 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1489 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone7ag1489 Cone-Chr7:10436979 Cone7ag1787 Cone-Chr7:11729437 1.87E-77 dispersed
Cone4ag1445 Cone-Chr4:11471892 Cone7ag1489 Cone-Chr7:10436979 0 wgd
Cone6ag1328 Cone-Chr6:10720027 Cone7ag1489 Cone-Chr7:10436979 8.01E-59 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1175 . . . . . . . . Cmo04g02526 . . . Car01g01585 . . . . . . . . . . . Cla08g00648 . . . . . . Cone4ag1445 Cone7ag1489 . . Lsi04g01809 . . Cme03g00434 . . . Bda01g01381 Bpe02g01594 . . . . . . . . . . Cpe01g02090 . . . . . . . . . . . . . . . . . Chy03g00565 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011525 0 0 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 0 1 2 27
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83064 PF07714 PK_Tyr_Ser-Thr 4.40E-49 CL0016 Cone PK