Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1496 ATGGACATAAAACTAATAGCCCTACTTCTATTATCAACGTTAGTACTAGGATTATCATCAGATCAATTAGCCCTTCCGGGCTGTCCCGACCACTGTGGAGATCTTGTCATCCCATACCCCTTTGGGATCCAAAATGATTGCTTCTTGAGTGACAGATTTTTCATCCAATGCAACACTTCTTTCGACCCTCCACTGGCTTATCTACATGAAAGTGATATCATTATAACTGATATATCCATTCATGGTGAGTTGCATATCTTACAACTAACAGCTCAAGATTGTTACAACACATCAGGCGATCAATTTGGCAACAATGAAATCAATCTTGAATTCGAGTCATTTACAATCTCTAGTACAAAAAACAAGTTTGTAGCACTTGGGTGCGACACTATTGCTATGTTAGAGGGAAATCAAAACGGAAGATCTTACCGGACTGGATGCTTGTCCGTTTGTGACAACACTAGCTATGTCCAAAACGGGTCTTGTGTTGGAGTAGGGTGCTGTCAGATCGAGATTCCAAATGCATTACAGCATGTGGAAATGTTAGTGACTAGCTTGGAGAATCATTCTTCAACAATGGAGTTTAATCCATGTGGATATGCGGCTTTTGTGGAGCAGAGTTGGTTCAATTTTTCTTCGGAGTATCTTAGGGAGTTTCCTGAGAAGGTTCCGCTCATGGTTGATTGGGCAGTTGGGAAAGATACCTGTGTGAATGCGGAAAACAAGACGAGGTGTTCATGTGGAGAAAATAGTAATCTTGTTCATTCTCTTAGAAATGACTCAGAGTATTTATGCAAGTGTTGGGATGGATACCAAGGAAATCCATACCTCATGAATGGCTGCCAAGACATTAATGAGTGCGAGGATCAGAAGCTCCATAACTGCACAGTATCCAGTTATTGTGTAAACACAAATGGGAGCTATACATGTCCTTGCCACAAGGGGTTCAACAAAATTGTTGGAAACTGCATCAAGAAGGAAACAGTAATTCAGTTCACTATTGGTAAGTACACTCTTTACTGTTCCATGAAGGGTTTTTAA 1041 40.54 MDIKLIALLLLSTLVLGLSSDQLALPGCPDHCGDLVIPYPFGIQNDCFLSDRFFIQCNTSFDPPLAYLHESDIIITDISIHGELHILQLTAQDCYNTSGDQFGNNEINLEFESFTISSTKNKFVALGCDTIAMLEGNQNGRSYRTGCLSVCDNTSYVQNGSCVGVGCCQIEIPNALQHVEMLVTSLENHSSTMEFNPCGYAAFVEQSWFNFSSEYLREFPEKVPLMVDWAVGKDTCVNAENKTRCSCGENSNLVHSLRNDSEYLCKCWDGYQGNPYLMNGCQDINECEDQKLHNCTVSSYCVNTNGSYTCPCHKGFNKIVGNCIKKETVIQFTIGKYTLYCSMKGF 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10464340 10465665 - Conep07aG0153900.1 Cone7ag1496 442092

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1496 346 ProSiteProfiles EGF-like domain profile. 283 324 IPR000742 -
Cone7ag1496 346 Pfam Wall-associated receptor kinase galacturonan-binding 28 82 IPR025287 GO:0030247(InterPro)
Cone7ag1496 346 PANTHER OSJNBA0016N04.9 PROTEIN 5 282 - -
Cone7ag1496 346 FunFam Fibrillin 2 278 326 - -
Cone7ag1496 346 ProSitePatterns EGF-like domain signature 2. 310 323 IPR000742 -
Cone7ag1496 346 Gene3D Plasmodium vivax P25 domain 226 331 - -
Cone7ag1496 346 SUPERFAMILY EGF/Laminin 282 318 - -
Cone7ag1496 346 CDD EGF_CA 283 316 - -
Cone7ag1496 346 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 301 312 IPR000152 -
Cone7ag1496 346 Pfam Calcium-binding EGF domain 283 323 IPR049883 -
Cone7ag1496 346 ProSitePatterns Calcium-binding EGF-like domain signature. 283 310 IPR018097 GO:0005509(InterPro)
Cone7ag1496 346 SMART egfca_6 283 324 IPR001881 GO:0005509(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1496 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone7ag1496 Cone-Chr7:10464340 Cone7ag1498 Cone-Chr7:10473344 3.81E-76 dispersed
Cone7ag1496 Cone-Chr7:10464340 Cone7ag1497 Cone-Chr7:10467632 1.03E-98 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g194 . . . . . . . . Cmo04g02520 . Cma01g01027 . . . . . . Bhi04g01849 . . . . . Lcy10g1283 Cla08g00643 . . . . . . . Cone7ag1496 . . . . . Cme03g00456 Blo17g00161 . . . . Bpe14g00403 . Bma02g00195 . . . . . . . . Cpe02g00871 . . . . . . . . . . . . . . Lsi08g00497 . Chy03g00554 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000104 3 8 3 4 2 5 1 5 5 8 7 5 10 11 3 9 5 3 5 6 7 5 5 3 4 16 0 1 1 10 160