Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone7ag1502 | ATGGGGAGAGGTAAGATTGAGATTAAGAGGATAGAAAACTTGAATAACAGGCAGGTGACCTTTTCAAAGAGAAGAGGTGGGATTATGAAGAAGGCTAAGGAGATCGCTGTTCTATGTGATGCTCACATCTCCGTTGTCATCTTTGGCAACTCTGGCAAGATGCATGAGTTCTGCAGCCCTAAGCCGTTGATTGACATATTGGAGAAGTATCACGGGCAGTCTGGGATTAAGTTGTGGGATGCTAAGCATCAGAATCTCAGCGACGAAGTGGATCGAATCAAGAAAGAAAATGATAGCATGCAGATCGATCTACGGCATCTGAAGGGGGAGGATATAACATCCTTGAACCACAAGGAGCTCATGGCTCTCGAAGCTGCACTGGAAAACGGCCTCACCTGTATCAGAAACAAGCAGTCAGAGTTCTCGAGAATGGTGGAGACAAATGTCAAAACCTTGGAAGAGGAAAGGAAGAATCTCAACTACAAGCTGTACCAGACAATTGGAGATCATCAGAATCAAGAGATGCATCATGATCATCATCATGTGGATCATAACAATACCAATGACAATGATGGGTATCAAAAGATGAGGGACTACAACACTTGTCACATCCCTTTTTCATTTCGTGGGCAGCCAATGCAGCCTAATCTCCACAACAGAATCTGA | 666 | 44.14 | MGRGKIEIKRIENLNNRQVTFSKRRGGIMKKAKEIAVLCDAHISVVIFGNSGKMHEFCSPKPLIDILEKYHGQSGIKLWDAKHQNLSDEVDRIKKENDSMQIDLRHLKGEDITSLNHKELMALEAALENGLTCIRNKQSEFSRMVETNVKTLEEERKNLNYKLYQTIGDHQNQEMHHDHHHVDHNNTNDNDGYQKMRDYNTCHIPFSFRGQPMQPNLHNRI | 221 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 10493014 | 10495335 | + | Conep07aG0154500.1 | Cone7ag1502 | 442098 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone7ag1502 | 221 | CDD | MADS_MEF2_like | 2 | 79 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
Cone7ag1502 | 221 | Pfam | K-box region | 81 | 163 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Cone7ag1502 | 221 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 184 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Cone7ag1502 | 221 | Coils | Coil | 76 | 110 | - | - | |
Cone7ag1502 | 221 | Gene3D | - | 14 | 99 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cone7ag1502 | 221 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cone7ag1502 | 221 | Coils | Coil | 142 | 162 | - | - | |
Cone7ag1502 | 221 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cone7ag1502 | 221 | ProSiteProfiles | K-box domain profile. | 83 | 170 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Cone7ag1502 | 221 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cone7ag1502 | 221 | SUPERFAMILY | SRF-like | 2 | 95 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cone7ag1502 | 221 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cone7ag1502 | 221 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cone7ag1502 | 221 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cone7ag1502 | 221 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone5ag1603 | Cone-Chr5:11256039 | Cone7ag1502 | Cone-Chr7:10493014 | 2.36E-11 | dispersed | |
Cone6ag1100 | Cone-Chr6:6826055 | Cone7ag1502 | Cone-Chr7:10493014 | 4.98E-31 | dispersed | |
Cone7ag1502 | Cone-Chr7:10493014 | Cone8ag0833 | Cone-Chr8:8345059 | 7.92E-30 | dispersed | |
Cone7ag1502 | Cone-Chr7:10493014 | Cone12ag0733 | Cone-Chr12:6743461 | 6.70E-32 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
46569 | None | None | None | None | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone7ag1502 | K09264 | - | csv:101222239 | 281.952 |