Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1502 ATGGGGAGAGGTAAGATTGAGATTAAGAGGATAGAAAACTTGAATAACAGGCAGGTGACCTTTTCAAAGAGAAGAGGTGGGATTATGAAGAAGGCTAAGGAGATCGCTGTTCTATGTGATGCTCACATCTCCGTTGTCATCTTTGGCAACTCTGGCAAGATGCATGAGTTCTGCAGCCCTAAGCCGTTGATTGACATATTGGAGAAGTATCACGGGCAGTCTGGGATTAAGTTGTGGGATGCTAAGCATCAGAATCTCAGCGACGAAGTGGATCGAATCAAGAAAGAAAATGATAGCATGCAGATCGATCTACGGCATCTGAAGGGGGAGGATATAACATCCTTGAACCACAAGGAGCTCATGGCTCTCGAAGCTGCACTGGAAAACGGCCTCACCTGTATCAGAAACAAGCAGTCAGAGTTCTCGAGAATGGTGGAGACAAATGTCAAAACCTTGGAAGAGGAAAGGAAGAATCTCAACTACAAGCTGTACCAGACAATTGGAGATCATCAGAATCAAGAGATGCATCATGATCATCATCATGTGGATCATAACAATACCAATGACAATGATGGGTATCAAAAGATGAGGGACTACAACACTTGTCACATCCCTTTTTCATTTCGTGGGCAGCCAATGCAGCCTAATCTCCACAACAGAATCTGA 666 44.14 MGRGKIEIKRIENLNNRQVTFSKRRGGIMKKAKEIAVLCDAHISVVIFGNSGKMHEFCSPKPLIDILEKYHGQSGIKLWDAKHQNLSDEVDRIKKENDSMQIDLRHLKGEDITSLNHKELMALEAALENGLTCIRNKQSEFSRMVETNVKTLEEERKNLNYKLYQTIGDHQNQEMHHDHHHVDHNNTNDNDGYQKMRDYNTCHIPFSFRGQPMQPNLHNRI 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10493014 10495335 + Conep07aG0154500.1 Cone7ag1502 442098
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1502 221 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cone7ag1502 221 Pfam K-box region 81 163 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cone7ag1502 221 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 184 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cone7ag1502 221 Coils Coil 76 110 - -
Cone7ag1502 221 Gene3D - 14 99 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone7ag1502 221 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone7ag1502 221 Coils Coil 142 162 - -
Cone7ag1502 221 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone7ag1502 221 ProSiteProfiles K-box domain profile. 83 170 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cone7ag1502 221 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone7ag1502 221 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone7ag1502 221 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone7ag1502 221 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone7ag1502 221 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone7ag1502 221 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag1603 Cone-Chr5:11256039 Cone7ag1502 Cone-Chr7:10493014 2.36E-11 dispersed
Cone6ag1100 Cone-Chr6:6826055 Cone7ag1502 Cone-Chr7:10493014 4.98E-31 dispersed
Cone7ag1502 Cone-Chr7:10493014 Cone8ag0833 Cone-Chr8:8345059 7.92E-30 dispersed
Cone7ag1502 Cone-Chr7:10493014 Cone12ag0733 Cone-Chr12:6743461 6.70E-32 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46569 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1502 K09264 - csv:101222239 281.952