Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1503 ATGATGAACACGAAGACATTCAAGGGGGCTTCCGTCTTTATCTCTCGAAACCTAGTGCCTCCCGAGATCTTCGACGCCCTACACGACTCTCTCAAGCTTAACGGAGCCGACGTCTTCCTCTGTTGCGACCCCTCTCGCAATGGTCCCAACGATTTCCATGTCATCTCCTCCATTGATCACGAAAAGTTTGAGCTTCTTAAAGCTAAGGGTTGCAACTTGCTCGGTCCTCAGTGTGTTCTTTCCTGCGCAAAAGAGCATAAACCTCTGCCTCGACAGGGTTTCACTTGCTGCCTTGCAATGGGAGGTGTGAAAGTACTTGCTTCTGGGTTTTTGAGAGATGAGAAGGTCAAGATAGGAAAATTAGTAACTGCAATGGGAGGAGTGTTGCAGAACAGAGCATCTTTTGATGTTAGCTTTGTCATTGTGAAGAATGTTTTGGCTGCAAAATACAAGTGGGCTTTTAACATTCTAAAGAAACCAATTGTTACAGTCGATTGGCTATATCAGTGCTGGAATGACCATAGTATTGTCTCTCAGGAGCCATATAGAGTTCTTCCCTTTTCTGGATTGACGATTTCTGTTTCTAGAATTCCAGCAGATGAGCGGAAGGAGATTGAAAAGCTTTGCATGCAACTTTGTTATCTTGACTATTTCTACGCTCCTGAGGGTGACAAATACAAGGTTGCACGGACATGGGGCCACATTAATATTGTGACTCGGAAGTGGTTTGATCAATCTATTGCTAGAAAAGCTTGTCTAAGCGAGGATTCATATCCTGTTGATGGCGCTTCTTTATCTTCAATTAAAATTGTGAAGGGCTTGACGAACCAGCATGGCCAAGAGAAGGCTATTGGAAGTGTGCAATCTGCTGCCTCCTTCATGCCCGCAGATTCAAACTTTTCAGCAGTCGCCTGCTCTGGGTTTGCAGATCTAGATTCAGAAGCTACACAGTCACAAAACCCATCTACATTCTTAGACCCTTCTTTTGTTAAAGATGGGGATGGTGAAGTGCCTACCACAATGCCGAAAAATGAAGGATCTCTTGATGGTTGTGTCGCAAATGACTCCCAATCTGAAGACAATGACCTTTACTTGTCAGAATGTAGAATAAAGTTTGTTGGTTTTGAAGCCCCTGATATGCGTAAACTAGTTAATTTGGTACATAAGGGTGGAGGCTCCCGATATATGTTGTTCAATGATAAACTGACGCACATAGTAGTTGGGACTCCTTCAGAGATAGAAAAAAAGGAGGTAAGAGACATTGCAGCTTCAGGTGTCATTCATGTGGTCAGAACCACCTGGCTTGAAGATTGTGATCGTGAGAAAAAGGAGGTCCCTGTTCTTCGGAGACACATGGCTTATGATGTACTTGTACCAAAAGGCTTGAACAGAGGAACAGTGACACATACGGGTATGGCCAGTATGAACCAAGCTAAACCTCCAGCTCATCTAAGCATGCCATCTAATAAGTTACAAGAAAGCATGAACTTGGATATTGAGATGCCATCATCGCCGGAGAAAAAGATTGAAGGGAAGCTGGAAGTCAACATTAATGGAGGCAGCACCTTGAATACTATGGCAGAAATATCCCAGCAAAGTCAAGCATCTGGTCTAATTATTGTTGACAAGAGTCAGAAAAAGACGCAACTTAATTCTACTACTCTTCACAACGAGAAGTCATCATGTGTATTTAAGGGGAAAAAATTTCGCTTCTCAAATTCATTTCCTGAAGATAGGAGAGCTGAAATCGTTGAGTGGGTAAATGAAGGGGGAGGAAAGGTAGCTGCTGATTATATGAAACAAAAGGTGCACTTTACAATTGAGTGCCATGGAGCCATACCAGGGAATGCAGATCTTCCCAAAACTACACACGTGTCCAGTCACTGGATCCGGTCCAGTTTAGAGGATGGATGCTTGCTGGATGTTGGTAGCCACATTCTTTATTCTCCACTTCCCTGCAGTATTCCTTTGCCTGGGTTCGAAAAGTTTAGGTTTTGTGTCTCACAATATGAAGAGAAAGATAGATTACTACTAAGAAATTTGTGCTTTATACTTGGAGCCAAGTTTGTGGAGAAATTGACCAAGAAGGCCACCCATTTAATATGCAAGTTCACCAGTGGACCGAAGTATGAGGCTGCCTGTAAATGGGGACTACAGTCAATTTCTCTTGAATGGATATATGAGTGTGTCAGACAGAATAAGGTTGTTGCTCTTGATTCTTATCGTCCAAAAGAGGCCACAGCCCAAGATCATGAGGCAGGATTGTGCACTACAAGTCAGTTTCCTACACAAGCAGCTGGTAGAGACAGAAATGGAAGCCCTAGAGGAGAGGCTGTCCAATCAGGGTTTTCCAGTAAAAAGGCGAGGCTTGTGGAAGAGGATGGCCAAAATGGTATAGTGTCTTCTGGGGATAAGCTAACTCACCCTATTTGGAATATGAATTCTACAGTAGACAACCAACTGAAAAGTTGTGGTGAAGTTTCCCATGCAGTTCCAGATGTAGCGGCTGCTATTGAGGACTTGCTAGAGCAGACAAGTAAGATTCATGATCAGAAGTCACCTGGAATGGCTAGCAGCGATAAAAATATTTTCTCATCTGATTGTCCAACCCTTGGCAAAGACCACCCAAATACTGATGCACTTATTGGCTTATCTAAGCATTGGTTGGACAGGACCGTGAAGAAGGATGACGTTAGTAATCCTTCTGGAGCTAGAAACACAGGTTTATATGATGGTTTTAGTGAGACACAAACAGAGTCTCAGGTTTCTGCTTCTGGCCATCCTCAACTCTCTCTTACTCTATCGCTCTATCCCTCTCTCTGA 2823 43.39 MMNTKTFKGASVFISRNLVPPEIFDALHDSLKLNGADVFLCCDPSRNGPNDFHVISSIDHEKFELLKAKGCNLLGPQCVLSCAKEHKPLPRQGFTCCLAMGGVKVLASGFLRDEKVKIGKLVTAMGGVLQNRASFDVSFVIVKNVLAAKYKWAFNILKKPIVTVDWLYQCWNDHSIVSQEPYRVLPFSGLTISVSRIPADERKEIEKLCMQLCYLDYFYAPEGDKYKVARTWGHINIVTRKWFDQSIARKACLSEDSYPVDGASLSSIKIVKGLTNQHGQEKAIGSVQSAASFMPADSNFSAVACSGFADLDSEATQSQNPSTFLDPSFVKDGDGEVPTTMPKNEGSLDGCVANDSQSEDNDLYLSECRIKFVGFEAPDMRKLVNLVHKGGGSRYMLFNDKLTHIVVGTPSEIEKKEVRDIAASGVIHVVRTTWLEDCDREKKEVPVLRRHMAYDVLVPKGLNRGTVTHTGMASMNQAKPPAHLSMPSNKLQESMNLDIEMPSSPEKKIEGKLEVNINGGSTLNTMAEISQQSQASGLIIVDKSQKKTQLNSTTLHNEKSSCVFKGKKFRFSNSFPEDRRAEIVEWVNEGGGKVAADYMKQKVHFTIECHGAIPGNADLPKTTHVSSHWIRSSLEDGCLLDVGSHILYSPLPCSIPLPGFEKFRFCVSQYEEKDRLLLRNLCFILGAKFVEKLTKKATHLICKFTSGPKYEAACKWGLQSISLEWIYECVRQNKVVALDSYRPKEATAQDHEAGLCTTSQFPTQAAGRDRNGSPRGEAVQSGFSSKKARLVEEDGQNGIVSSGDKLTHPIWNMNSTVDNQLKSCGEVSHAVPDVAAAIEDLLEQTSKIHDQKSPGMASSDKNIFSSDCPTLGKDHPNTDALIGLSKHWLDRTVKKDDVSNPSGARNTGLYDGFSETQTESQVSASGHPQLSLTLSLYPSL 940
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10496429 10502172 + Conep07aG0154600.1 Cone7ag1503 442099

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1503 940 MobiDBLite consensus disorder prediction 895 928 - -
Cone7ag1503 940 ProSiteProfiles BRCT domain profile. 102 184 IPR001357 -
Cone7ag1503 940 FunFam Transcription coactivator 556 653 - -
Cone7ag1503 940 SUPERFAMILY BRCT domain 57 184 IPR036420 -
Cone7ag1503 940 Gene3D BRCT domain 186 262 IPR036420 -
Cone7ag1503 940 Gene3D BRCT domain 98 185 IPR036420 -
Cone7ag1503 940 SUPERFAMILY BRCT domain 624 744 IPR036420 -
Cone7ag1503 940 Gene3D BRCT domain 554 653 IPR036420 -
Cone7ag1503 940 MobiDBLite consensus disorder prediction 899 928 - -
Cone7ag1503 940 CDD BRCT 103 170 - -
Cone7ag1503 940 Pfam twin BRCT domain 664 725 IPR001357 -
Cone7ag1503 940 SUPERFAMILY BRCT domain 356 446 IPR036420 -
Cone7ag1503 940 ProSiteProfiles BRCT domain profile. 559 647 IPR001357 -
Cone7ag1503 940 ProSiteProfiles BRCT domain profile. 660 743 IPR001357 -
Cone7ag1503 940 SMART BRCT_7 657 733 IPR001357 -
Cone7ag1503 940 SMART BRCT_7 362 442 IPR001357 -
Cone7ag1503 940 SMART BRCT_7 97 174 IPR001357 -
Cone7ag1503 940 SMART BRCT_7 4 86 IPR001357 -
Cone7ag1503 940 SMART BRCT_7 561 637 IPR001357 -
Cone7ag1503 940 SMART BRCT_7 184 250 IPR001357 -
Cone7ag1503 940 CDD BRCT_TopBP1_rpt2_like 658 733 - -
Cone7ag1503 940 Gene3D BRCT domain 654 749 IPR036420 -
Cone7ag1503 940 Gene3D BRCT domain 37 94 IPR036420 -
Cone7ag1503 940 PANTHER DNA REPLICATION REGULATOR DPB11-RELATED 23 774 - GO:0006270(PANTHER)|GO:0007095(PANTHER)|GO:0033314(PANTHER)
Cone7ag1503 940 FunFam Transcription coactivator 342 452 - -
Cone7ag1503 940 ProSiteProfiles BRCT domain profile. 360 452 IPR001357 -
Cone7ag1503 940 Gene3D BRCT domain 350 449 IPR036420 -
Cone7ag1503 940 FunFam Transcription coactivator 97 185 - -
Cone7ag1503 940 CDD BRCT_TopBP1_rpt2_like 186 250 - -
Cone7ag1503 940 SUPERFAMILY BRCT domain 563 649 IPR036420 -
Cone7ag1503 940 SUPERFAMILY BRCT domain 186 261 IPR036420 -
Cone7ag1503 940 MobiDBLite consensus disorder prediction 759 787 - -
Cone7ag1503 940 Pfam BRCA1 C Terminus (BRCT) domain 363 438 IPR001357 -
Cone7ag1503 940 Pfam BRCA1 C Terminus (BRCT) domain 108 171 IPR001357 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1503 K10728 - - vvi:100260958 1148.65
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g215 . . . . . . . . . . . Cma09g00770 . . . Cpe06g00607 . . . . . . . . . . . . . . . . Cone7ag1503 . . Lsi04g02416 Csa04g01777 . . . . . . . . . . . . Cmo09g00762 . . . Car09g00680 . Cpe02g00570 Bhi09g02711 . . . . Mch11g0853 . Cla11g01556 Cam11g1620 Cec11g1647 Cco11g1648 Clacu11g1777 Cmu11g1593 Cre11g2011 . . Chy07g00604 Cme07g00814
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003479 1 4 1 1 1 0 2 1 0 4 1 1 1 1 1 2 1 1 2 1 7 1 1 1 2 1 1 1 1 1 44