Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1514 ATGTCGACCCAGAATAGCCGTCCTGCGTTCTCCTCTTCGACAACGTCTTCGTCCTTGCCAAAGCGTAACGCCCCATCATCGTCGTCGGAAAATGCTGGAAAAGTTATGGCGAAGAAGCGAGTACCTCTCGGTAATATCAGCAATATTAAGAATGGGCCAGCACGGAGCTCTGTGCCATCATCTACTATGATTCCATGTACAACTAAATTTGCTAAGGCCAAGACAGTAGTGCCTCCTACCACCACAACACTACCCAATGCCAAGTTAAATTCAATTGCTCCAAGCAAGGTCAAAGCTTTTCCAAGAAGCGATGCTGCTTTTCCCAATCTGCTTGCTCCACCTTCCCTGTGCAAAATGGACGTTTCTCCAAGCAAATCAGATGCAGTTTCGGTTTCTGTGGACGAAACCATGTCTACTTGTGATTCTTTCAACAGCCCTGAAGTTGAATACTTAGACAACAATGATGTTCTGCCAATCAATTCCATTGATCGGAAGACTTTTAGCACTCTAAACATTACGGACAATTCGAAAACAACAGGGAATGTTTTTAAAAGAGATATTTCTGTGAAGATGGAAACAGATGACACAATTGTGAATGTTGATAAGAATTTGATAGATCCTCAGCTTTGTGCTACTATTGCTTGTGATATATATAAGCATCTACGTGCCTCTGAGTTATGCAAGAGGCCTTCCGCAGACTTCATGGAAAGAACTCAGAAGGACATAAATCCCAGCATGCGAGCAATACTTATTGATTGGCTTGTCGAGGTAGCAGAAGAGTATAGACTTGTTCCTGATACGTTATATTTGACAGTAAACTACATTGATCGTTACCTTTCTGGAAATGTTATGAATCGACAACAGTTACAGCTGCTTGGAGTTGCTTGCATGATGATTGCCTCCAAGTACGAGGAAATTTGTGCACCTCAAGTGGAGGAATTTTGTTACATTACGGACAACACTTACTTCAAGGAAGAGGTCTTGCAAATGGAATCTGCAGTTTTGAATTACTTGAAGTTTGAAATGACAGCCCCATCAGTTAAATGTTTCTTAAGGCGATTTATTAGAGCAGCCCAAGTGATTGACGAATCACCCGGAGCATCAATGCATTTAGAGTGCCTTGCAAACTACCTCGCCGAGCTATCTCTTTTAGAGTACAACATGCTCTCTTACGCTCCTTCTCTCATAGCGGCATCAGCTATTTTCCTAGCCATCTTCATACTTTCACCTGTGAAGAAACCATGGAACTCCACCATGCAGCACTATACGCTATATCAACCATCCGATCTGCACGATTGTGTCAAGGATCTACATCGCCTATGCTCTAACACACAGAATTCTAGCCTACCGTCTATCAGAGAGAAGTATAGTCAGCATAAGTACAAGCATGTGGCAAAGAAGTACTACCCTCCGGCCTCAATACCGGCAGAGTTTTTCCAAAACTAA 1446 42.74 MSTQNSRPAFSSSTTSSSLPKRNAPSSSSENAGKVMAKKRVPLGNISNIKNGPARSSVPSSTMIPCTTKFAKAKTVVPPTTTTLPNAKLNSIAPSKVKAFPRSDAAFPNLLAPPSLCKMDVSPSKSDAVSVSVDETMSTCDSFNSPEVEYLDNNDVLPINSIDRKTFSTLNITDNSKTTGNVFKRDISVKMETDDTIVNVDKNLIDPQLCATIACDIYKHLRASELCKRPSADFMERTQKDINPSMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNVMNRQQLQLLGVACMMIASKYEEICAPQVEEFCYITDNTYFKEEVLQMESAVLNYLKFEMTAPSVKCFLRRFIRAAQVIDESPGASMHLECLANYLAELSLLEYNMLSYAPSLIAASAIFLAIFILSPVKKPWNSTMQHYTLYQPSDLHDCVKDLHRLCSNTQNSSLPSIREKYSQHKYKHVAKKYYPPASIPAEFFQN 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10540540 10543170 - Conep07aG0155700.1 Cone7ag1514 442110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1514 481 SUPERFAMILY Cyclin-like 206 342 IPR036915 -
Cone7ag1514 481 SMART Cyclin_C_2 345 470 IPR004367 -
Cone7ag1514 481 MobiDBLite consensus disorder prediction 1 33 - -
Cone7ag1514 481 SUPERFAMILY Cyclin-like 345 470 IPR036915 -
Cone7ag1514 481 PIRSF Cyclin_A_B_D_E 1 478 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Cone7ag1514 481 MobiDBLite consensus disorder prediction 1 61 - -
Cone7ag1514 481 Pfam Cyclin, C-terminal domain 345 466 IPR004367 -
Cone7ag1514 481 Pfam Cyclin, N-terminal domain 216 343 IPR006671 -
Cone7ag1514 481 SMART cyclin_7 349 439 IPR013763 -
Cone7ag1514 481 SMART cyclin_7 252 336 IPR013763 -
Cone7ag1514 481 CDD CYCLIN_AtCycA-like_rpt2 345 461 - -
Cone7ag1514 481 FunFam Cyclin A1 332 466 - -
Cone7ag1514 481 Gene3D - 230 343 - -
Cone7ag1514 481 CDD CYCLIN_AtCycA_like_rpt1 206 341 - -
Cone7ag1514 481 ProSitePatterns Cyclins signature. 247 278 IPR048258 -
Cone7ag1514 481 PANTHER CYCLINS 198 458 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cone7ag1514 481 Gene3D - 216 466 - -
Cone7ag1514 481 FunFam Mitotic cyclin 6 230 330 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0216 Cone-Chr20:926385 Cone7ag1514 Cone-Chr7:10540540 3.45E-86 dispersed
Cone4ag1826 Cone-Chr4:13192809 Cone7ag1514 Cone-Chr7:10540540 3.42E-95 dispersed
Cone7ag1514 Cone-Chr7:10540540 Cone7ag1730 Cone-Chr7:11463130 1.04E-94 dispersed
Cone4ag1423 Cone-Chr4:11351242 Cone7ag1514 Cone-Chr7:10540540 2.36E-306 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1514 K06627 - rcu:8270999 649.818