Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1533 ATGGAGTTTGCTCCCACGTTTTCTAACTTCTCTCTTTTCTACTTGTGTCTTTTCATGCTCTCACTCATAGTACCACCAATCAAACCCGCATATGCTTCCGATCAAGATTGTGATTTTCCGGCAGTATTCAACTTTGGCGACTCCAATTCCGACACTGGTGGACTTTCCGCTGCTTTTATTACACCTCCTCCGCCTAATGGACAGACCTTCTTTCACATGCCTGCTGGACGGTGGGCTGATGGCCGTCTCATCATCGATTTCATAGCGAGCAATTTGGAGAAACCGTTTCTGAGTGCATATCTTGATTCTCTGGGAAGCAATTTCAGGCATGGTGCAAATTTCGCGACTGCAGCATCTACAATAAGGTTGCCCGGACGTGTTATGCCAACTAAAGGCGGATTTAGTCCGTTTTACCTAGAAGTGCAGTTCTTACAGTTCCTGCAATTCAAGATCAAATCACAAATGATCTGGCAACAAGGAGGAAAGTATGCTGAATTATTGCCTAAAGAAGAGTACTTTTCTAAAGCTCTTTACACAATTGATATTGGTCAAAATGATCTTATGGAAGGATTCTTAAGCAAAGCCACCGATGAAGTCAATGCATCCGTTCCCGATATAGTAGCTCAGCTTTCGACCCAAGTCATGAACATATATAAGCTAGGAGGGAGATCATTTTGGATCCACAACACCGGGCCGATAGGCTGCCTTGCCTACACGCTAACTTACTTTCCATCGCCGAAAGACAATGCTGGTTGTTCGATACCTCACAATGAAGTTGCTCAACACTTCAACCGCAAGCTCAAAGAGGCCATTGTTGAACTGAGAAAGGATCTACCTTTAGCCGCTGTCACTTATGTAGATGTCTACTCCGTCAAATATTCCCTCTTTACCCAACCTAAAAAACACGGACTCGTGGCTCCCTTAGTAGTTTGTTGTGGTTATGGGGAGAAGTATAATTACACTAAAGATGTGATGTGTGGAGAAAAAGTTATTCTGGAAGAAGGGAATGAAATAGTTGTGGGATCATGTGAAGATCCCTCTAAGAAAGTTAATTGGGATGGAGTTCACTACACTGACGCTGCAAACAAGCTCGTGTTTGACCGAATCTCAACCGGAGATTTCTCAGATCCACCAATTCCTTTGAGAAAGGCATGCTTTAGGGACTCTAATTCTGCAAGTTTATCACAGGGATCTCCTGTTGTTGATGAATTATAA 1215 43.29 MEFAPTFSNFSLFYLCLFMLSLIVPPIKPAYASDQDCDFPAVFNFGDSNSDTGGLSAAFITPPPPNGQTFFHMPAGRWADGRLIIDFIASNLEKPFLSAYLDSLGSNFRHGANFATAASTIRLPGRVMPTKGGFSPFYLEVQFLQFLQFKIKSQMIWQQGGKYAELLPKEEYFSKALYTIDIGQNDLMEGFLSKATDEVNASVPDIVAQLSTQVMNIYKLGGRSFWIHNTGPIGCLAYTLTYFPSPKDNAGCSIPHNEVAQHFNRKLKEAIVELRKDLPLAAVTYVDVYSVKYSLFTQPKKHGLVAPLVVCCGYGEKYNYTKDVMCGEKVILEEGNEIVVGSCEDPSKKVNWDGVHYTDAANKLVFDRISTGDFSDPPIPLRKACFRDSNSASLSQGSPVVDEL 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10604058 10605800 + Conep07aG0157900.1 Cone7ag1533 442129

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1533 404 PANTHER ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN 16 367 - -
Cone7ag1533 404 Pfam GDSL-like Lipase/Acylhydrolase 42 369 IPR001087 GO:0016788(InterPro)
Cone7ag1533 404 Gene3D SGNH hydrolase 30 371 IPR036514 -
Cone7ag1533 404 CDD SGNH_plant_lipase_like 40 373 IPR035669 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1533 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag1083 Cone-Chr13:8809752 Cone7ag1533 Cone-Chr7:10604058 2.14E-141 dispersed
Cone16ag0952 Cone-Chr16:9607882 Cone7ag1533 Cone-Chr7:10604058 1.36E-115 dispersed
Cone16ag0953 Cone-Chr16:9610455 Cone7ag1533 Cone-Chr7:10604058 7.02E-125 dispersed
Cone19ag1071 Cone-Chr19:7839857 Cone7ag1533 Cone-Chr7:10604058 7.40E-133 dispersed
Cone2ag0131 Cone-Chr2:686482 Cone7ag1533 Cone-Chr7:10604058 3.18E-68 dispersed
Cone3ag0748 Cone-Chr3:3879041 Cone7ag1533 Cone-Chr7:10604058 2.71E-103 dispersed
Cone5ag0018 Cone-Chr5:122655 Cone7ag1533 Cone-Chr7:10604058 2.77E-102 dispersed
Cone5ag1671 Cone-Chr5:11864288 Cone7ag1533 Cone-Chr7:10604058 2.57E-48 dispersed
Cone7ag1533 Cone-Chr7:10604058 Cone8ag0696 Cone-Chr8:7028638 1.65E-71 dispersed
Cone14ag0399 Cone-Chr14:1851656 Cone7ag1533 Cone-Chr7:10604058 3.82E-91 transposed
Cone4ag1408 Cone-Chr4:11288740 Cone7ag1533 Cone-Chr7:10604058 7.48E-263 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g267 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1408 Cone7ag1533 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0023681 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 3