Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1538 ATGGAGGTCACTCCTGCTGAGATCGGGCAGCCGGAGAGGCGAAGTGTTCGTCGTAGACTGGTGCAATCCACGCTTTTCCCTCATAAACCTGAAGAGCCGGAAGATAATGGCGATCGGAAAGATGAGAAGGATTTCGTTGACGACGACGAGTACTATGGGAACGAAAGAAGGAAGAAGAGGAAGGCCAAGACGAAGCCGGTGTCTCCGGCTAAAGTTTCAAAAAAGCTGTCAAAGGAGAAGCAATCAACGAATTTGACACCTAAAAAGAGCATATTAAGTAAGCTGAATGGAGATACATCTCCATCCATGCCTGATCTGCGGTTAGAGGCAAAGATGACAGCAGAGGAAAATTCACGGATGTTTGCAGGAAAGCAACAACATCCTTTTTTCTCATCGCTTAGAACAGGCAAAAAATCTCAGGAAGCAAATGCGATGGTTGATGATTGTTATCCAGCTAAAAGGAAGAACAAAGGAATCTCTTGTGGCCCGATTCATGTGTTTGAATCAACTGAGGATGAAGTCATATATCTGGACTGGAGAAATTGGGTACTTACTGAGGATAATGGTGTTACTAGTGGCAGCCATGGGCTTGAAAGCAATTTTACCTCAATTTTTTATAGGTCTTGCAAGTCATTAAGTTTGGATGAGCTTCCCACTGTTTCACATCCTTGTGAGGCATTCTTTATCCAGGATCGATGCTTGGATCAAAGTGTTGTAGAGCAAGAACATACACATCACATATCACCACCAGTATCCTCTATGGATGCTGATAGCAGAGTGACAAGCGTTCTCCTTTTGGATGGCACTGAACTGGACTGCAAGCATTATAGAGTGTCTGAGCACAGTGATTGTGAAGCAGTGTGGAATATCAAGTGTCAAAGTATTCTTCAGGAAAGGATGAGGCCGACCAAGGATGGTGTATGGACCCATGAGTATCGGCCAAAGAAGGCCACTGAGGTTTGTGGTAACCGTGATTCAGTGAAGTTTCTGAATGAGTGGCTTCGTCTTTGGTACGAAAGAAATTCACAAACCAGCAAAGATTTCACTGGCCGTGATAAATGCGACATGCAAGATAATGATCTCTATTGCACTCATAGTGCCTCTGACTCAGAAAGCACAGAAGAAGAGGATAGCTTGAAGAATGTTCTCCTTCTTACTGGACCAGCTGGAAGTGGGAAATCTGCAGCTATCTATGCCTGTGCAAAAGACCAAGGTTTTAGGGTTTCAGAGATTAATGCATCTGTGGAACGATCTGGGGCTATTCTCAGGGAGATGATTGGAGAGATTCTAAAATCACATCAGCTGAAATGGCCATTTGTAAATCCCCTGGAATCAAGGGATTCTCTTGATTTTGTTGGAGGATTGGGGGACTTTGTCCTGGAAAAGGAAGGCTGTGAACAAGGAGAAGTTAAACCTTTGATCCTGCTTGAGGATGTGGATATTATTTTTCCAGAAGATCGTGGTTTTATTGCTGCAGTTCAAGAGATTGTTGATACAGGAAAAGGACCTATAATTTTGACCAGTAATAGTGATAATCCTACTCTGCCAGATAATTTGAGCAGGCTTAAGGTGTCTTTTGAACTACCATCATCAGACGAGCTGGTTTGCCATTTACATACAATATGTGCTACTGAGGGAGTCAGTATTCAGCCACAGTTAGTGGAGCAATTTATTGGGTGTTTTCAAGGGGATATTCGGAAAAGTATTACAAATCTTCAGTTCTGGTTCCAGGGTGAAAGATTTGGAGCAGATAGGAAAGCTCAGAGTATGGGCAGTTCACTGTTGTTTGATCTTGATGCTGGCCATCAGATACTGCCAAGGGCAATCCCCTGGGGTTTCCCCTCTCAGCTATCTGAGTTAATTGAGAAAGAGATTGCTAGGTCACTATCAATGATGCAAGAAAGCTCTAGCTTAGTGGATGAAATGGAAGAAGAGTTTGAAAATATGGAATTGCAGACTAGCATGTTCTTACATAAATGTAAGAAAGATACAATAGAGGCCAAGAAGGTAGCGATGCTGAGAGAGAATGGTACTGTGCATGATTACAATGATTTTACAGGTCCATTCAAAGCCGATTGTGGGTATTCTAATATGTTAGATGCCCCTGTGGAATTCTGTAGAAGGAACCCCAGGAGAAAGCTTGACATGGTAGTTTTTTCTGATTCTGAAGAAGATCTTATTAATAATGAGCGTTCCATAGTGCCGGATAAAGATGCTAATGGTGAACCAGGCCTGGACCTAAATGAGTTACCATCTCCTAACCCAGAATCTGATGAGCTGCTTTGTCCTAGAGAAGAAAATATAGATGGAGATCATAAACTATCTCCAGAAACTTCAAACAAAGATCCTACTAATGGACCATTTCACGAGCTCAACAAATCCTCTCAAAACCCTGCATTTGATAAGCTCCTTTGTCCTAGAGCAGAGAATTTGGAGAGAGATCACAGTGTTTGTTCAGAAACTGAAAATAAAGATGCTAATGGTGGACCAGGCCTTGAACTCAACAAGTTTCCCTCTCTAAATCTAGAATTTATGCTACTTTGTCCTAGAGCAGGGAACTTGGACAGAGATCATAATGTCAGTTCAGAAACTACAAATAAAGTCACTAACGAGGGACTGGGGCTTGATCTCAACAAGTTTCCCTGTCTAAATCCAGTATTGGAACTGCTTTCTTCTAGAGATGAGAATTTGGATGGAAATCATGTTATCCGTTCAGAAGCTGCAAATAGAGGTGTTACTGATGGACTGAGGATTGAAATCAACAAGCTTCCCTGTCTAAACCCAGCATTTGAGCCACTCTGTCCTAGACCAGAGAATTTGGATGGAGATCATAATTTTTGTTCAGAAGCTGCAAATAAAGGTACTACAAGGGGACTACGGCTTGAACTCAACAGGTTTCCCTGTATAGACCCACCTTATTCTGGAGTTAAGAAGTTGAATGGTGATCATAATTTTTGTTCAGAACCTGCAAAGAAGGATATTATTAACAGAGCAGCCATTGAAAAAAAAATTCCCAGTCTAAACCTACCATTTGAGCTACTATGTCCTGCAGTAGAGAATTCAGACACAGATCATAATTTGTGTTCAGAAACTGCAGATTATATGAATGAGACATGCAAGTCAGTTGATATATCACGTGTACCTGAATCAACATATGTTCCTGAGACTGCAATTGAAAATGAGACAGAGCTATCACCTGAAACAATCTCGTCAGGTGATTCTGCTGAAATTAGGAAAGTTTCTGAAAGTAATGAGCTGACAGAGATGCTGTTATCAGTTGGAACAAACTGTCTTGATAACCCTCCAGTGGATATAAATCTAGCATCGGATGTGTTGGGTAATAATTGTGAAGTACTTGCCGATTCTTCTTATCAAGAGGGGGAAGAAAATTGTCCAGATGAACATGTGGAAGCTATTACAGGGGCCTATCAGGTAATGGATGAGTGCAGTCGAATGGATTTCAATAGATCAGAGAAGCCTATGATTAAGGTATTATCTGATTTAGTACAAGAATCATGGAAAAAACTACGAGTCTGCCATGCAGATCTAAGACATCATGTCACCTTAGAGAAGCAAGAAGTATGTCAGATTGTTGACCTTGCTCACAAAATTAGCAATATAATATCTGACTATGACCTATTGCTTTCTTACTGTGAACCACAAGGTTCATATGAAACGCTAAGGGTTTTGCCTGAGGAGCTAGATTTTACCTGCTGGTGTGATGAACAATTACAGATGGCATCCACAACAACAGAACATGGATTTTGCTTGTATACAAGAGACATTGCTGGCATAGGATCAACAATGGGTTGTGAGATCAATGTGGATATAGCAGCGGAGATGTTGGCTTCTTCAACTAATACAGTGTCATTGGATAAATTGAGAAGACACGGTAAGAGAGACAGCAAGGATTCACCTGCCAGAAAAAAATTAGAGACGGTCCTACCAAACAGTGATTCGATGTTACAGAGTGAAACAAGATCTCACCATTGTCGTAACATAATACCATCAATAATTCCCACAAGATCATATTTAGGACTGAAAGGTCTTGGATCCGTTGAGTATCTCTCTTCACTGCGGCACATTTCAAAATCAGAAGCTTCACGATTAACAGAAGGCAATGATAAGAGAAAAATGCGGAGAGGAAGATTGCCTCGACACTATTTGAGCAGCGGTTCATTGATGTTGTCTCCAGAAGATATCGAATTGCTGGATCAATCTACCCTTCCGTAG 4233 41.39 MEVTPAEIGQPERRSVRRRLVQSTLFPHKPEEPEDNGDRKDEKDFVDDDEYYGNERRKKRKAKTKPVSPAKVSKKLSKEKQSTNLTPKKSILSKLNGDTSPSMPDLRLEAKMTAEENSRMFAGKQQHPFFSSLRTGKKSQEANAMVDDCYPAKRKNKGISCGPIHVFESTEDEVIYLDWRNWVLTEDNGVTSGSHGLESNFTSIFYRSCKSLSLDELPTVSHPCEAFFIQDRCLDQSVVEQEHTHHISPPVSSMDADSRVTSVLLLDGTELDCKHYRVSEHSDCEAVWNIKCQSILQERMRPTKDGVWTHEYRPKKATEVCGNRDSVKFLNEWLRLWYERNSQTSKDFTGRDKCDMQDNDLYCTHSASDSESTEEEDSLKNVLLLTGPAGSGKSAAIYACAKDQGFRVSEINASVERSGAILREMIGEILKSHQLKWPFVNPLESRDSLDFVGGLGDFVLEKEGCEQGEVKPLILLEDVDIIFPEDRGFIAAVQEIVDTGKGPIILTSNSDNPTLPDNLSRLKVSFELPSSDELVCHLHTICATEGVSIQPQLVEQFIGCFQGDIRKSITNLQFWFQGERFGADRKAQSMGSSLLFDLDAGHQILPRAIPWGFPSQLSELIEKEIARSLSMMQESSSLVDEMEEEFENMELQTSMFLHKCKKDTIEAKKVAMLRENGTVHDYNDFTGPFKADCGYSNMLDAPVEFCRRNPRRKLDMVVFSDSEEDLINNERSIVPDKDANGEPGLDLNELPSPNPESDELLCPREENIDGDHKLSPETSNKDPTNGPFHELNKSSQNPAFDKLLCPRAENLERDHSVCSETENKDANGGPGLELNKFPSLNLEFMLLCPRAGNLDRDHNVSSETTNKVTNEGLGLDLNKFPCLNPVLELLSSRDENLDGNHVIRSEAANRGVTDGLRIEINKLPCLNPAFEPLCPRPENLDGDHNFCSEAANKGTTRGLRLELNRFPCIDPPYSGVKKLNGDHNFCSEPAKKDIINRAAIEKKIPSLNLPFELLCPAVENSDTDHNLCSETADYMNETCKSVDISRVPESTYVPETAIENETELSPETISSGDSAEIRKVSESNELTEMLLSVGTNCLDNPPVDINLASDVLGNNCEVLADSSYQEGEENCPDEHVEAITGAYQVMDECSRMDFNRSEKPMIKVLSDLVQESWKKLRVCHADLRHHVTLEKQEVCQIVDLAHKISNIISDYDLLLSYCEPQGSYETLRVLPEELDFTCWCDEQLQMASTTTEHGFCLYTRDIAGIGSTMGCEINVDIAAEMLASSTNTVSLDKLRRHGKRDSKDSPARKKLETVLPNSDSMLQSETRSHHCRNIIPSIIPTRSYLGLKGLGSVEYLSSLRHISKSEASRLTEGNDKRKMRRGRLPRHYLSSGSLMLSPEDIELLDQSTLP 1410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10624672 10632415 - Conep07aG0158400.1 Cone7ag1538 442134

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1538 1410 MobiDBLite consensus disorder prediction 729 796 - -
Cone7ag1538 1410 MobiDBLite consensus disorder prediction 759 778 - -
Cone7ag1538 1410 MobiDBLite consensus disorder prediction 11 57 - -
Cone7ag1538 1410 Coils Coil 632 652 - -
Cone7ag1538 1410 MobiDBLite consensus disorder prediction 1293 1328 - -
Cone7ag1538 1410 MobiDBLite consensus disorder prediction 83 100 - -
Cone7ag1538 1410 Gene3D - 305 527 IPR027417 -
Cone7ag1538 1410 Gene3D - 529 591 - -
Cone7ag1538 1410 MobiDBLite consensus disorder prediction 779 796 - -
Cone7ag1538 1410 PANTHER CELL CYCLE CHECKPOINT PROTEIN RAD17 25 1407 IPR004582 GO:0000077(PANTHER)|GO:0003682(PANTHER)|GO:0003689(PANTHER)|GO:0006281(InterPro)|GO:0006281(PANTHER)|GO:0033314(PANTHER)
Cone7ag1538 1410 MobiDBLite consensus disorder prediction 1293 1310 - -
Cone7ag1538 1410 MobiDBLite consensus disorder prediction 1366 1391 - -
Cone7ag1538 1410 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 307 577 IPR027417 -
Cone7ag1538 1410 MobiDBLite consensus disorder prediction 1 104 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1538 K26118 - - csv:101216488 643.654
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1400 Cone-Chr4:11257060 Cone7ag1538 Cone-Chr7:10624672 3.92E-67 transposed
Cone4ag1401 Cone-Chr4:11258648 Cone7ag1538 Cone-Chr7:10624672 2.01E-48 transposed
Cone4ag1399 Cone-Chr4:11252805 Cone7ag1538 Cone-Chr7:10624672 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g276 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1401 Cone7ag1538 . . Lsi04g02385 . . . . . . . . . . . . . . . . . . . . Bhi09g02668 . . . . . . . . . . . . . . . Chy07g00649 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005441 1 2 1 1 1 0 1 1 0 3 1 1 1 1 1 1 1 3 1 1 1 1 1 1 2 1 1 2 2 2 37