Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1546 ATGGACGGCCAGAAAAGTCAGGCGAAGCTCACGAGAACACAGTCCTCTCTTCTTCGTTCTTCGCCAACCATGCGATCTTCCATTCACAGTCTCTCTTCCTTTAACATCGCGGAAGAAGACGTGATGTCTGCCGATCAAGACAACAGCAACGACGACGATGAAGAGAAGCAGAAGACGAAGAAGCCCAACCGGTCCGGTTCATTCTCGATTCCTAGATGGAACCGGCTCGGAAACGGAACCTCTGTTATTTTTCTTGCTTCGCTGACTTGCTTTACTCTCTTCTCCCTCTTCTTCTTCACTCTATTCTTCTTCAACCTGAGAAAGGAAGAGATTCTAACTTCCGAGAACCTCCTGCTTGCTCTGGTCTTCATCGCTGTCGCCCTCTTCTTTTTGAACAAGAAGAAAGGTCTGATCCACTTGACCATTTCAAATCTCAAACAAAGGGTCGGGTTTAATCCGAACACCAATTCCAAACCCGTCCAGTGGTTCATCGGGGATCCGAACGAGATCAAATCTTCTCCCCAAAAGAGGTTGAAGAAACTATCGATCCGAGAAGGCGTGGAGTTCTATAGCAATGGAGATTTCTACGAGGGTGAGTTCCATAAAGGAAAGTGTAATGGAAGTGGAGTTTACTACTACTACGCAAATGGAAGATACGAAGGAGATTGGATCGATGGAAGATACGATGGGTATGGGATAGAGAGCTGGTCGAGGGGAAGTAAGTATAGAGGTCAGTATAGGCAGGGCCTTAGACATGGATTTGGAGTTTATAGATTCTATACAGGTGATTCTTATGCTGGTGAATGGTATAATGGTCAAAGCCATGGTCTTGGCGTTCAGACTTGCTCCGATTTCAGCTTGTATGTTGGCGAGTTCAAGCACGGTGTCAAGCACGGCCTTGGATCTTACCATTTTAGGAATGGAGATAGATACGCAGGGGACTATTTTGGAGACAAAGTTCATGGATTTGGTGTCTATCACTTTGCAAATGGCCATTTCTATGAAGGGTCCTGGCATGAAGGCCGGAAACAAGGCTACGGCATGTACACTTTTCGAAATGGTCATACCAGATGCGGAGAATGGGATTGTGGCAATCTTAAACACCCCCTATCACCTCTCACTGATCCAATTCTTCGAGCTGTCGAGGGTGCTAGAAATACAGCAGAGAAGGCTATGAAGCTCGGGAGGGTGGATGAAGAGGTGAACAAGGCAGTAATGGCTGCAAATAAGGCAGCCACTGCAGCTAGAGTTGCTGCCATTAGAACCGTTCAAAACAGGATGGATGGCAAGTTTTGTGATTCACTTCATCTCTGA 1314 46.5 MDGQKSQAKLTRTQSSLLRSSPTMRSSIHSLSSFNIAEEDVMSADQDNSNDDDEEKQKTKKPNRSGSFSIPRWNRLGNGTSVIFLASLTCFTLFSLFFFTLFFFNLRKEEILTSENLLLALVFIAVALFFLNKKKGLIHLTISNLKQRVGFNPNTNSKPVQWFIGDPNEIKSSPQKRLKKLSIREGVEFYSNGDFYEGEFHKGKCNGSGVYYYYANGRYEGDWIDGRYDGYGIESWSRGSKYRGQYRQGLRHGFGVYRFYTGDSYAGEWYNGQSHGLGVQTCSDFSLYVGEFKHGVKHGLGSYHFRNGDRYAGDYFGDKVHGFGVYHFANGHFYEGSWHEGRKQGYGMYTFRNGHTRCGEWDCGNLKHPLSPLTDPILRAVEGARNTAEKAMKLGRVDEEVNKAVMAANKAATAARVAAIRTVQNRMDGKFCDSLHL 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10661023 10662740 - Conep07aG0159200.1 Cone7ag1546 442142

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1546 437 Pfam MORN repeat 265 284 IPR003409 -
Cone7ag1546 437 Pfam MORN repeat 196 214 IPR003409 -
Cone7ag1546 437 Pfam MORN repeat 311 332 IPR003409 -
Cone7ag1546 437 Pfam MORN repeat 288 310 IPR003409 -
Cone7ag1546 437 Pfam MORN repeat 219 240 IPR003409 -
Cone7ag1546 437 Pfam MORN repeat 334 356 IPR003409 -
Cone7ag1546 437 Pfam MORN repeat 242 263 IPR003409 -
Cone7ag1546 437 SUPERFAMILY Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 236 364 - -
Cone7ag1546 437 FunFam Phosphatidylinositol 4-phosphate 5-kinase 8 271 316 - -
Cone7ag1546 437 FunFam Phosphatidylinositol 4-phosphate 5-kinase 8 225 270 - -
Cone7ag1546 437 MobiDBLite consensus disorder prediction 1 43 - -
Cone7ag1546 437 SMART morn 217 238 IPR003409 -
Cone7ag1546 437 SMART morn 286 307 IPR003409 -
Cone7ag1546 437 SMART morn 240 261 IPR003409 -
Cone7ag1546 437 SMART morn 332 353 IPR003409 -
Cone7ag1546 437 SMART morn 263 284 IPR003409 -
Cone7ag1546 437 SMART morn 194 215 IPR003409 -
Cone7ag1546 437 SMART morn 309 330 IPR003409 -
Cone7ag1546 437 MobiDBLite consensus disorder prediction 1 66 - -
Cone7ag1546 437 Gene3D - 271 316 - -
Cone7ag1546 437 Gene3D - 317 375 - -
Cone7ag1546 437 Gene3D - 184 225 - -
Cone7ag1546 437 Gene3D - 226 270 - -
Cone7ag1546 437 PANTHER PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE RELATED 67 427 - -
Cone7ag1546 437 FunFam Phosphatidylinositol 4-phosphate 5-kinase 8 182 224 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1546 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone7ag1546 Cone-Chr7:10661023 Cone9ag0631 Cone-Chr9:2996991 1.06E-22 dispersed
Cone17ag1274 Cone-Chr17:9171129 Cone7ag1546 Cone-Chr7:10661023 2.30E-73 wgd
Cone20ag0452 Cone-Chr20:2319023 Cone7ag1546 Cone-Chr7:10661023 1.22E-80 wgd
Cone4ag1389 Cone-Chr4:11220689 Cone7ag1546 Cone-Chr7:10661023 2.83E-164 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g292 . Blo12g00674 . Bda03g00530 Bpe02g00076 Bpe04g00484 . . Cmo04g02460 Cmo15g00707 . Cma09g00805 . . . Cpe06g00640 . . . . . . . . Cla08g00565 Cam08g0982 Cec08g0571 Cco08g0681 Clacu08g0690 . Cre08g0504 Cone4ag1389 Cone7ag1546 Cone17ag1274 Cone20ag0452 Lsi04g02379 Csa04g01814 . . . . Bda11g00744 . . . . . . . Cmo09g00798 . . Car04g02278 Car09g00721 Cpe01g02040 . Bhi09g02656 . . . Hepe01g2270 Mch11g0819 . Cla11g01525 Cam11g1585 Cec11g1614 Cco11g1615 Clacu11g1742 Cmu11g1560 Cre11g1976 Lsi08g00414 . Chy07g00660 Cme07g00868
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001672 2 2 3 1 2 1 4 2 1 2 2 2 3 2 2 4 2 4 4 2 2 2 2 2 2 2 2 4 2 1 68