Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1550 ATGGCAGACGGCGCCGGAGGAAAGGTCTCCTTCAAAGTCACTCTCACCTCTGATCCTAAGCTTCCTTTCAAAGTGTTTAGCGTTCCGGAGGCGGCGCCTTTTACCGCGGTTTTGAAGTTCGCGGCGGAGGAATTCAAAGTGCCCCCTCAGACTAGCGCCATTATCACCAACGATGGTGTTGGAATCAATCCTCAACAAAGTGCTGGCAATGTTTTCCTTAAACATGGTTCTGAATTGCGTCTGATTCCTCGTGATCGGGTTGGAGCCTTCGGCAAATAA 279 50.54 MADGAGGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGNVFLKHGSELRLIPRDRVGAFGK 92
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10675828 10678193 + Conep07aG0159600.1 Cone7ag1550 442146

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1550 92 CDD Ubl_UFM1 9 83 - -
Cone7ag1550 92 SUPERFAMILY Ubiquitin-like 5 88 IPR029071 -
Cone7ag1550 92 Gene3D - 6 89 - -
Cone7ag1550 92 PANTHER UBIQUITIN-FOLD MODIFIER 1 5 89 IPR005375 GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0071569(InterPro)|GO:1990592(PANTHER)
Cone7ag1550 92 Pfam Ubiquitin fold modifier 1 protein 8 82 IPR005375 GO:0071569(InterPro)
Cone7ag1550 92 FunFam Ubiquitin-fold modifier 1 5 90 - -
Cone7ag1550 92 PIRSF Ufm1 1 90 IPR005375 GO:0071569(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1550 K12162 - - mdm:103429492 173.326
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1381 Cone-Chr4:11188649 Cone7ag1550 Cone-Chr7:10675828 1.11E-35 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g311 . . . . . . . . Cmo04g02451 Cmo15g00714 . . . . . . . . . . . . . . . . . . . . . Cone4ag1381 Cone7ag1550 . . . . . . . Blo18g00192 . Bda01g01414 Bpe02g01627 . . . . . . . . Car04g02270 Car15g00646 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009163 1 1 0 0 1 1 2 1 1 1 1 1 1 1 1 2 1 2 1 1 1 2 1 1 1 1 1 2 1 1 33