Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1552 ATGACGTCGTGTTCAGGCTCGCTTTGTAGTAACACAAATGTCATGCAAAGACCTAGTCATGAAATTCCGTCGTTTCCTCAAGTGCTTCATAGGAAAAGGATTTCATCCGGTAGTACGACGACTACTACTACTTCAGTTGTAAGCAAGAACGATTCCTGTTCTTCTTCATCCTGTTCTTCTTCAAGAATATCATCATCCACCATACAATTAGTATCTGATCATTCCTCGCTGGAAGTCAGTAAGAATAAGAATGATATTCATAAAGGGCTCGTCTCTAATTCCATACGGGCTGCTCCATCGTATTCATTGTCTACATCCAGTTCAAGCAGTTACTCCTTTAAAGGAATGGGTTTGAGCAAGCTTTCTGGATGTTATGAATGCCGAATGGTGGTCGATTCCGTTTACGGAATCGCTAGTACACGACATTCTTCTCCCAGAGCTGCCCTTTTCCCTTGTCCTCAATGTGGTGACATTTTCATGAAACCTGATCATCTAGAGCTTCATCAAGCCGTCAACCATGCAGTATCTGAGCTTGCAGCAGAAGATACAAGCAAGAACATAGTGGAGATAATATTCCAATCAAGCTGGCTAAAGAAACAGACACCAATCTGCCAGATCGACCGCATCCTTAAAGTTCACAACACACAAAAAACACTCTCTCAATTCGAAGAGTACAGAGACAGCATCAAGTCGAAAGCGAACAAGCAGCAACTACTGCTCTCCAAGACTAAGCATGCTCGTTGCATAGCAGACGGAAACGAGCTTCTCCGTTTCCATTGCACCACGTTGTCCTGCTCTCTAGGCCTAAACGGCTCGTCTAATCTATGCAAGTCCTCGAGTAGTAGTACTGACCGACAAGAACTACCATGCCACGTATGTGACATCATAAGGAACGGTTTCAAACTTGGTGAGTCCGGGATTTTGACGACGGGGACAAGCGGGAAGGCGCATGATAAGGTTTGTGAGGGTGAAGGCGAGGGTCAGAAGAGGGCTATGTTGGTTTGTAGGGTGATTTCAGGGAGAGTGAAGAAGAACTTGTTTCTGGATGATCAGGTGGGGAGTATTAGTAGCAGTAGTAGTAGTACGGAGGAGTATGACTCAGTTTTGGGGGGAGATACTAATGATCATGATCACGTGGGAGTTTATTCAAATTTGGATGAGTTATATGTGTTTGATCCTAAAGCTATTTTGCCTTGTTTTGTTGTTATCTATGGCGGCTTTTAG 1224 44.04 MTSCSGSLCSNTNVMQRPSHEIPSFPQVLHRKRISSGSTTTTTTSVVSKNDSCSSSSCSSSRISSSTIQLVSDHSSLEVSKNKNDIHKGLVSNSIRAAPSYSLSTSSSSSYSFKGMGLSKLSGCYECRMVVDSVYGIASTRHSSPRAALFPCPQCGDIFMKPDHLELHQAVNHAVSELAAEDTSKNIVEIIFQSSWLKKQTPICQIDRILKVHNTQKTLSQFEEYRDSIKSKANKQQLLLSKTKHARCIADGNELLRFHCTTLSCSLGLNGSSNLCKSSSSSTDRQELPCHVCDIIRNGFKLGESGILTTGTSGKAHDKVCEGEGEGQKRAMLVCRVISGRVKKNLFLDDQVGSISSSSSSTEEYDSVLGGDTNDHDHVGVYSNLDELYVFDPKAILPCFVVIYGGF 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10684926 10686247 - Conep07aG0159800.1 Cone7ag1552 442148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1552 407 SUPERFAMILY ADP-ribosylation 175 405 - -
Cone7ag1552 407 Gene3D - 173 405 - -
Cone7ag1552 407 MobiDBLite consensus disorder prediction 31 61 - -
Cone7ag1552 407 MobiDBLite consensus disorder prediction 15 61 - -
Cone7ag1552 407 ProSitePatterns Zinc finger C2H2 type domain signature. 152 173 IPR013087 -
Cone7ag1552 407 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 45 404 - -
Cone7ag1552 407 ProSiteProfiles Zinc finger C2H2 type domain profile. 150 178 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1968 Cone-Chr4:13835607 Cone7ag1552 Cone-Chr7:10684926 3.20E-92 dispersed
Cone5ag1093 Cone-Chr5:4864741 Cone7ag1552 Cone-Chr7:10684926 1.77E-59 dispersed
Cone7ag1552 Cone-Chr7:10684926 Cone7ag1881 Cone-Chr7:12127236 4.88E-88 dispersed
Cone17ag1266 Cone-Chr17:9127782 Cone7ag1552 Cone-Chr7:10684926 8.32E-115 wgd
Cone4ag1379 Cone-Chr4:11178786 Cone7ag1552 Cone-Chr7:10684926 7.88E-235 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46573 PF12895 ANAPC3 3.50E-16 CL0020 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1552 - - - 0.0