Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1553 ATGGACAGGGAGGCTAAGCTTCCGGTCCCGACTGCAAACCCAAGGGTTATCAACCGTCTGATCAACCCAGACAACACTTCGTCGTCTTCGTCGTCCTTCTATTCAACCTCTCCGCCGGACTTTCTCCGGCAAGTGCAAGCTGCCTGCAAGCGTCATCGCCCTCTAGGTACAAAGCAGCCAATCAGTATAAAGGCTAAGCGCATGGTGATTCCCCAAGAAGAAATCTCAAGTTCGGCTCATCTTATGGAAGAAACAAAGCGGTCTCAAGAAGTAGTTTCATCGATTCAGGCTCATACTGCAAAGGATGCAATTGCACAAACAAAGACTGCAGTGAGCCTCACCGGGGAAACTCATGAAGATGTTTCAATAACACCACCATACAATTTAGGTGCCATGACCAAAAGCATTGGTCAAAGTTACATCAACCCACTAAGAGATGAACCGAAACTGACTTCTAGTTGTCGCGACATTAATCTTATGCCATTGCACATAGGTTCTCAACACAATGATCAGCAGAAAAAGGTTCAGTTCTCAATTAGAAGTGATAAGACATCTGAGGAAATGGAATGGTCAGCAGGAAATCAAGGAGAGCTTTCCACTATCATCAACAATGAACCAAGGCAACAGAATTTTCAGAATATAGAATCAGATATGAATTCACAAAGACAGGGCGGGACTTCTTTGTTGGCAAAGGGAGTGCCAGCTACTCAGGATCAGATGCACCATTTTAAAAGCTTTTTGGGCCAACCTTATACTCAATCCTCGGTTATTGGGCCATCATATGCGACCACAACATCTGTACATTCAACATCAGCTCCTTTGTGTAATTCAGGTACCTATTGTTCCCATACGCTTCAAGATGGTGATTTCAATGTGAATACTCAACCTGCAAATCAAGGGAATAAGGTGCAGCCATTGACTTCTTCTCATAAAGATATCGGTAGATTGGTGCTTAATGAGACAGCCCCCATACCCCAACCTGACGATTCTACTATTGATACCCAAACGGAAGTAAAAGAATATGACATTTTTCAGGAGCAAAAGGGGAGTTTGCCAAAGGAATCTAAAGCAGCTGAAGATTATTCAGTTCTTGATAATAAGTCAAATGTGGGGAAAGGATATGTTGCTGATATTTCCACTATACAATCACAGGAACACTTACCAAAAACCTCAATATCAGATGTGAAGGTGAAGGTTTCTAAATCTGAAAAGCTGGAGAAGGTTTCAAGTAGTAAAGGCACATTGACGGCACGCAAGAAGAATTATGACCCTGACTTGTTCTTTAAAGTTAATGGAAAGCTTTATCAAAGGCTAGGCAAGATAGGTAGTGGAGGAAGCAGTGAGGTCCATAAAGTCATTTCATCTGATTGTACAATCTACGCACTAAAAAAAATCAAGCTTAAAGGACGTGATTATGCCACTGCTTATGGGTTCTGCCAGGAAATTGTCTATTTACATAAGTTGGTAGGGAAGGACAACATCATACAGCTTATAGACTATGAGGTAACAGACAAGACTTTACTCAAGGAAGTCCTGAATGGCTCCATGAGTAACAAAGATGCTAGGGTCAAAGATGATGGTTATATATACATGGTACTTGAATATGGGGAAATTGATCTCGCTCACATGCTATCACAGAAGTGGAAGGAAATAGATGGCTCCAATACGAAAATGGACGAAAACTGGCTTCGATTTTTCTGGCAGCAAATTCTTCTAGCAGTCAACACCATCCATGAGCAACGCATTGTGCACTCTGACCTCAAGCCAGCCAATTTCCTTCTTGTGAAAGGCTCCTTAAAGCTAATTGACTTTGGTATTGCAAAAGCAATTATGAGCGACACTACGAATATCCAAAGAGATTCACAGGTAGGTACACTTAGTTACATGTCCCCAGAGGCTTTTTTGTGTAACGAGAGTGATGAAAATGGAAACACAATCAAGTGTGGTAGGCCATCCGATATTTGGTCCCTTGGCTGCATTCTTTATCAGATGGCATATGGGAGAACACCTTTCTCGGATTACAAGACATTCTGGGCCAAGTTCAAGGTTATAACCGATCCAAACCATGAAATTATGTATGAACCTGTATTGAACCCTTGGCTTCTTGATCTTATGAAGAAGTGCCTCGCATGGGACCGCAACGAGCGATGGAGAATCCCTCAACTTCTCCAACACCCTTTCCTCATCCCTCCAATTCCACCTCAGCTAGTATTATCTAGAGATCAATGCTCTAGATTGCTTCAACTCATTGCCGATACTTGTGCCAATAAGGAGGAATCTTTGATGCTTTGCTCTCAGCTGCAGCAGTTGTGCAGTGTACCAATTAGGCCCTTAACCTCTCTGCTAATAATGTCGAGAGACCAATGTGAAATGACGGCACAAATGTCAGAAATTCATCGTCAACTCCAGAAAGATTTAGCAAGTAGAGATTGA 2433 42.33 MDREAKLPVPTANPRVINRLINPDNTSSSSSSFYSTSPPDFLRQVQAACKRHRPLGTKQPISIKAKRMVIPQEEISSSAHLMEETKRSQEVVSSIQAHTAKDAIAQTKTAVSLTGETHEDVSITPPYNLGAMTKSIGQSYINPLRDEPKLTSSCRDINLMPLHIGSQHNDQQKKVQFSIRSDKTSEEMEWSAGNQGELSTIINNEPRQQNFQNIESDMNSQRQGGTSLLAKGVPATQDQMHHFKSFLGQPYTQSSVIGPSYATTTSVHSTSAPLCNSGTYCSHTLQDGDFNVNTQPANQGNKVQPLTSSHKDIGRLVLNETAPIPQPDDSTIDTQTEVKEYDIFQEQKGSLPKESKAAEDYSVLDNKSNVGKGYVADISTIQSQEHLPKTSISDVKVKVSKSEKLEKVSSSKGTLTARKKNYDPDLFFKVNGKLYQRLGKIGSGGSSEVHKVISSDCTIYALKKIKLKGRDYATAYGFCQEIVYLHKLVGKDNIIQLIDYEVTDKTLLKEVLNGSMSNKDARVKDDGYIYMVLEYGEIDLAHMLSQKWKEIDGSNTKMDENWLRFFWQQILLAVNTIHEQRIVHSDLKPANFLLVKGSLKLIDFGIAKAIMSDTTNIQRDSQVGTLSYMSPEAFLCNESDENGNTIKCGRPSDIWSLGCILYQMAYGRTPFSDYKTFWAKFKVITDPNHEIMYEPVLNPWLLDLMKKCLAWDRNERWRIPQLLQHPFLIPPIPPQLVLSRDQCSRLLQLIADTCANKEESLMLCSQLQQLCSVPIRPLTSLLIMSRDQCEMTAQMSEIHRQLQKDLASRD 810
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10688013 10691394 + Conep07aG0159900.1 Cone7ag1553 442149

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1553 810 ProSiteProfiles Protein kinase domain profile. 435 728 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone7ag1553 810 MobiDBLite consensus disorder prediction 19 38 - -
Cone7ag1553 810 Pfam Protein kinase domain 435 728 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone7ag1553 810 CDD PKc_Mps1 433 728 IPR027084 -
Cone7ag1553 810 FunFam Dual specificity protein kinase TTK 428 537 - -
Cone7ag1553 810 Gene3D Phosphorylase Kinase; domain 1 428 514 - -
Cone7ag1553 810 ProSitePatterns Serine/Threonine protein kinases active-site signature. 582 594 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone7ag1553 810 SUPERFAMILY Protein kinase-like (PK-like) 428 740 IPR011009 -
Cone7ag1553 810 Gene3D Transferase(Phosphotransferase) domain 1 549 730 - -
Cone7ag1553 810 FunFam serine/threonine-protein kinase mph1 isoform X1 549 731 - -
Cone7ag1553 810 SMART serkin_6 435 728 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone7ag1553 810 PANTHER MIXED LINEAGE PROTEIN KINASE 24 756 - GO:0000776(PANTHER)|GO:0004674(PANTHER)|GO:0004712(PANTHER)|GO:0005634(PANTHER)|GO:0007059(PANTHER)|GO:0007094(PANTHER)|GO:0018105(PANTHER)|GO:0033316(PANTHER)|GO:0034501(PANTHER)
Cone7ag1553 810 ProSitePatterns Protein kinases ATP-binding region signature. 441 463 IPR017441 GO:0005524(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1553 K08866 - - mdm:103401857 942.954
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone2ag0779 Cone-Chr2:33772721 Cone7ag1553 Cone-Chr7:10688013 7.39E-07 dispersed
Cone7ag1553 Cone-Chr7:10688013 Cone4ag1372 Cone-Chr4:11134160 6.31E-20 dispersed
Cone7ag1553 Cone-Chr7:10688013 Cone7ag1559 Cone-Chr7:10715928 1.53E-20 proximal
Cone20ag0460 Cone-Chr20:2387780 Cone7ag1553 Cone-Chr7:10688013 0 wgd
Cone4ag1378 Cone-Chr4:11174201 Cone7ag1553 Cone-Chr7:10688013 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g316 . . . Bda03g00522 . Bpe04g00476 . . Cmo04g02447 Cmo15g00716 . . . . . . . . . . . . . . . . . . . . . Cone4ag1378 Cone7ag1553 . Cone20ag0460 . . . . Blo17g00188 . . Bda13g01492 . Bpe14g00372 . Bma02g00233 . . . . . Car04g02260 Car15g00648 Cpe01g02029 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003876 2 3 2 4 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83068 PF12799 LRR_4 3.20E-06 CL0022 Cone PK