Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1559 ATGCAGCATCTACCACATATTTTCACTCACAGCCGGCGGACTAGACGCATCGATCCGAGGAGCAAAGGAAAACCGAGGCTTGAGCGTCAGAATGCTCAGAGGAACATAGAATATGACGCCGGATCTTCTTCTTCTTCGACGCTGGACGGTTCATCGGAACCCCTGCACACTCTATCGCTTGAGTTGTTGAGCCAAACGAGCTTTCGGATAGAAGGAACTGATGGTGAGTTTGATCGGCTATGTCGGAGTTTGGGCCTCTCAGGTCCCGATGACTTTGCTATTCCAACGGCGGCGTGGGACGCTAGGAAGGTCCGCTCGTCCTCGGATCGTGTAGCGAGATCCAACTTGCAGGATAGTCTGACGGACAACAAGGAAGTTGAAGCTGAATTGTGTGCGAGGGTTGTGGATACTGTTAGGATTGGGGATTTGACTGAGTTGACTCGGAATCAACAGGTCAAAACGGGTGAGAAATCTATTCTTATAGATAGGAGTAGTGGAGGTGTAGGAGGTGGAATCAAAGGTGTTCGACCCCCGGTACTTAAACCGCCGCCGAGCATGAGTATTCCGATGATTGATAGTAAGAGTTCAACTTGGGACATTTGCAGGAATTTCGGTCCGGATGATGAAATACGCCCTTCACAAGGAGTCCGAGGTCGGAATAGTTCTTCTTCCGAAGATGGTGATGACAGAGAAGAAGCTTACGTATCAGCTTTTAAGGGCGAAGTGGAGCGGAATCTGGTTGGGCTTCGGAAGAGTGCTGCCTTTTTTGAGTCTCCTTGTTGTTCCTTTACAACTTCAAACGATGATGATTCTTCGAGCACTACCACGGAGCCTCCGTCCAGTATTTCACCGAATGGGAGGTTGCCCACCATCACGTCCTGGCAAAAAGGTCAACTTCTTGGCAGCGGTTCATTTGGATCAGTATATGAAGGAATTTCTGATGGTGGATTTTTTTTCGCCATCAAGGAAGTTTCATTGCTCGATCAAGATAGCCAAGGAAGGCAAAGTATTTCTCAGCTTGAGCAGGAGATCGCTCTTCTAAGCCGGTTTAAGCACGAGAACATAGTCAGGTATCATGGCACAGCTAAGGATGAATCAAAACTCTATATCTTTCTTGAGCTTGTAACCCAAGGGTCCCTCATGAATCTCTATCAGAGGTATCATCTTCGAGATAGCCAAGTCTCCGCTTACACAAGGCAGATTCTTCATGGCTTGAAGTATCTGCATGACCAAAATGTGATTCACAGGGACATCAAATGTGCAAATATTCTGGTGGATGCCAATGGATCAGTGAAGCTTTCAGATTTTGGATTGGCAAAGGCAACAAAACTGAACGATGTTAAATCTTGCAAGGGCACTGCATTCTGGATGGCACCAGAGGTTGTTAATAGGAGGAGTCAAGGGTATGGCCTTCCAGCTGATATCTGGAGCCTTGGCTGCACTGTCTTGGAGATGTTGACCGGTCAGATTCCATATGCTGAGTTGGAATGGGTGACGGCAGTATATAGGATCGGAAAGGGCGTGCTTCCTTATGTTCCCGATTCTCTCTCACAAGATGCACGGGATTTCATTTTGAAGTGCCTACGGGTTAATCCAAGTGACCGCCCCACTGCCGCTGAATTATTAAAGCATTCATTTGTGAAGATTCCACTTCCCACTAACTCAGGCTCAGCATCTCCTTTCAATCATGGCAGAAGGCATTAG 1704 47.48 MQHLPHIFTHSRRTRRIDPRSKGKPRLERQNAQRNIEYDAGSSSSSTLDGSSEPLHTLSLELLSQTSFRIEGTDGEFDRLCRSLGLSGPDDFAIPTAAWDARKVRSSSDRVARSNLQDSLTDNKEVEAELCARVVDTVRIGDLTELTRNQQVKTGEKSILIDRSSGGVGGGIKGVRPPVLKPPPSMSIPMIDSKSSTWDICRNFGPDDEIRPSQGVRGRNSSSSEDGDDREEAYVSAFKGEVERNLVGLRKSAAFFESPCCSFTTSNDDDSSSTTTEPPSSISPNGRLPTITSWQKGQLLGSGSFGSVYEGISDGGFFFAIKEVSLLDQDSQGRQSISQLEQEIALLSRFKHENIVRYHGTAKDESKLYIFLELVTQGSLMNLYQRYHLRDSQVSAYTRQILHGLKYLHDQNVIHRDIKCANILVDANGSVKLSDFGLAKATKLNDVKSCKGTAFWMAPEVVNRRSQGYGLPADIWSLGCTVLEMLTGQIPYAELEWVTAVYRIGKGVLPYVPDSLSQDARDFILKCLRVNPSDRPTAAELLKHSFVKIPLPTNSGSASPFNHGRRH 567
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10715928 10720486 - Conep07aG0160500.1 Cone7ag1559 442155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1559 567 ProSitePatterns Protein kinases ATP-binding region signature. 300 322 IPR017441 GO:0005524(InterPro)
Cone7ag1559 567 ProSitePatterns Serine/Threonine protein kinases active-site signature. 413 425 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone7ag1559 567 MobiDBLite consensus disorder prediction 167 231 - -
Cone7ag1559 567 Gene3D Transferase(Phosphotransferase) domain 1 292 560 - -
Cone7ag1559 567 MobiDBLite consensus disorder prediction 264 288 - -
Cone7ag1559 567 Pfam Protein kinase domain 295 547 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone7ag1559 567 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 20 548 IPR050538 -
Cone7ag1559 567 SMART serkin_6 294 547 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone7ag1559 567 MobiDBLite consensus disorder prediction 1 20 - -
Cone7ag1559 567 FunFam Mitogen-activated protein kinase 1, putative, expressed 292 559 - -
Cone7ag1559 567 SUPERFAMILY Protein kinase-like (PK-like) 293 548 IPR011009 -
Cone7ag1559 567 MobiDBLite consensus disorder prediction 35 52 - -
Cone7ag1559 567 MobiDBLite consensus disorder prediction 1 52 - -
Cone7ag1559 567 ProSiteProfiles Protein kinase domain profile. 294 547 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0942 Cone-Chr12:8202842 Cone7ag1559 Cone-Chr7:10715928 7.44E-74 dispersed
Cone20ag0460 Cone-Chr20:2387780 Cone7ag1559 Cone-Chr7:10715928 2.68E-20 dispersed
Cone7ag1559 Cone-Chr7:10715928 Cone8ag0976 Cone-Chr8:9169745 1.72E-170 dispersed
Cone7ag1553 Cone-Chr7:10688013 Cone7ag1559 Cone-Chr7:10715928 1.53E-20 proximal
Cone17ag1261 Cone-Chr17:9077026 Cone7ag1559 Cone-Chr7:10715928 1.09E-178 wgd
Cone20ag0467 Cone-Chr20:2449845 Cone7ag1559 Cone-Chr7:10715928 3.76E-176 wgd
Cone4ag1372 Cone-Chr4:11134160 Cone7ag1559 Cone-Chr7:10715928 0 wgd
Cone6ag1606 Cone-Chr6:12440854 Cone7ag1559 Cone-Chr7:10715928 5.42E-26 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83069 PF00083 Sugar_tr 5.30E-67 CL0015 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1559 K13414 - rcu:8274146 674.085