Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1562 ATGCGTCCCCTTGAGGTCGGTACTCGCGTCTTGTGCCGTTGGAGGGACGGAAAATTTCACCCGGTAAAAGTTATCGAGCGTCGCAAAATTTCCGTCGACAATCCCAATGATTACGAGTATTACGTCCCCTACACTGAGTTCAATTGGAGGCTTGATGAATGGATTAAGCTTGACCAACTTGATCTTGATTCAGTTGAGACTGTTGTTGATGAGAAAGTGGAAGTGAAGGATGATGGAAAGAAGAACAAAGTTTATGCGCAGAATCTTTGTTACCTGGCAAAATTGAAAAGCATTCAGAGGAATCCTACAATTTGGCTTGCATCCTCACCCTTCCTCCTTATCAGAGAAAATGATACGGCAACTTATGAACTTTCCAAGAAAGAAGGTAAGGTTGGCACACCGGAAAGACCCCTCCCCAACCTTGGAATGTTTGAGCTACAAAGGATACTGGACCTGGAGCTGAGTGACATGACAGCAATCCAGGGCTTGGAATTGATTCAGTACAGAAAAGGGCAGCATGTTATCTCTGCTGATCCAAAAGTCTTGGATTGTCATCTAAAAGCAGCTAGTCGGTGCAGTCTTGAGGTTGATGCTACCAAATTGATCTGGACTCCTTGTAAGGAACAAAGCTAA 633 44.39 MRPLEVGTRVLCRWRDGKFHPVKVIERRKISVDNPNDYEYYVPYTEFNWRLDEWIKLDQLDLDSVETVVDEKVEVKDDGKKNKVYAQNLCYLAKLKSIQRNPTIWLASSPFLLIRENDTATYELSKKEGKVGTPERPLPNLGMFELQRILDLELSDMTAIQGLELIQYRKGQHVISADPKVLDCHLKAASRCSLEVDATKLIWTPCKEQS 210
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10733882 10736222 + Conep07aG0160800.1 Cone7ag1562 442158

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1562 210 PANTHER HISTONE ACETYLTRANSFERASE 121 207 IPR050603 GO:0000790(PANTHER)|GO:0003712(PANTHER)|GO:0045892(PANTHER)|GO:0045944(PANTHER)
Cone7ag1562 210 Gene3D - 121 137 - -
Cone7ag1562 210 Gene3D - 138 168 IPR036388 -
Cone7ag1562 210 Gene3D - 1 103 - -
Cone7ag1562 210 SUPERFAMILY Chromo domain-like 2 74 IPR016197 -
Cone7ag1562 210 Pfam RNA binding activity-knot of a chromodomain 4 62 IPR025995 -
Cone7ag1562 210 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 76 205 IPR016181 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1562 K11308 - - sly:101257133 132.88
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1257 Cone-Chr17:9051917 Cone7ag1562 Cone-Chr7:10733882 2.24E-60 wgd
Cone20ag0470 Cone-Chr20:2477098 Cone7ag1562 Cone-Chr7:10733882 4.15E-61 wgd
Cone4ag1369 Cone-Chr4:11120228 Cone7ag1562 Cone-Chr7:10733882 2.14E-73 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g333 . . . Bda03g00515 . Bpe04g00471 . . Cmo04g02426 Cmo15g00736 . . . . . . . . . . . . . . . . . . . . . Cone4ag1369 Cone7ag1562 Cone17ag1257 Cone20ag0470 . . . . . . Bda11g00749 . . . . . . . . . . Car04g02241 Car15g00663 Cpe01g02016 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0054068 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1