Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1565 ATGGCTTTACAAAACATTGGAGCTTCAAACCATGACTATGCCTTCTACAGGTATCAGATGCCGAAAATGATCACCAAAATTGAAGGTAGAGGAAATGGCATGAAGATTAATGGGGTCAACATGAACTTCATCAAGAAATATCTTCGATGCTATGGTTGTGGCAACCCATGCTATGGTCGTGGTAACCCTGAAACAGATGTTCTTTTAACTAAGACACAGATGACCACCCTGAAATGTGCTGCTTGTGGGTTCATTTCAGATGTCGATATGAGGAATAAGCTCACCACATTTATACTCAAGAATCCTCCAGAGCAGAAGAAAGGATCAAAAGACAAGAAGGCTATGAGGAGGGCCGAGAAGGGAAGGCTCAAGGAAGCTATAAAGAAAAAGGGAAGTGATGCTCTCGAGACCTTTTGTCTGAAGCCCCGCTCCACTGATACTGTTAGGGAGGTGGCCTTGGTTCGAAAAGCACTCTATGACTGCGATGTGCTAGAAGCGGAGTTTATTTTGGAGTGGTACCAGGCTGGCTCATGTGGCATCAACAAGAGCACCCAGCGGTGGAAGAATGTCAAGCCTTTTATTGAGTGGCTCCAAAGTGCCGAGTCTGATTCAGAAGACGAGTGA 624 45.19 MALQNIGASNHDYAFYRYQMPKMITKIEGRGNGMKINGVNMNFIKKYLRCYGCGNPCYGRGNPETDVLLTKTQMTTLKCAACGFISDVDMRNKLTTFILKNPPEQKKGSKDKKAMRRAEKGRLKEAIKKKGSDALETFCLKPRSTDTVREVALVRKALYDCDVLEAEFILEWYQAGSCGINKSTQRWKNVKPFIEWLQSAESDSEDE 207
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10746232 10747099 + Conep07aG0161100.1 Cone7ag1565 442161

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1565 207 Gene3D - 2 43 - -
Cone7ag1565 207 Pfam eIF4-gamma/eIF5/eIF2-epsilon 134 207 IPR003307 GO:0005515(InterPro)
Cone7ag1565 207 SUPERFAMILY ARM repeat 85 201 IPR016024 -
Cone7ag1565 207 ProSiteProfiles W2 domain profile. 33 207 IPR003307 GO:0005515(InterPro)
Cone7ag1565 207 SMART 542_3 120 203 IPR003307 GO:0005515(InterPro)
Cone7ag1565 207 Gene3D - 65 106 - -
Cone7ag1565 207 FunFam Eukaryotic translation initiation factor 5 61 101 - -
Cone7ag1565 207 MobiDBLite consensus disorder prediction 104 120 - -
Cone7ag1565 207 MobiDBLite consensus disorder prediction 101 120 - -
Cone7ag1565 207 Gene3D - 124 207 - -
Cone7ag1565 207 SMART eIF2Bneu4 15 85 IPR002735 GO:0003743(InterPro)|GO:0006413(InterPro)
Cone7ag1565 207 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 57 128 IPR045196 GO:0001731(PANTHER)|GO:0001732(PANTHER)|GO:0003743(PANTHER)|GO:0003743(InterPro)|GO:0005092(PANTHER)|GO:0005829(PANTHER)|GO:0006413(InterPro)|GO:0071074(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1565 K03262 - - sly:101262288 173.711
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1366 Cone-Chr4:11104946 Cone7ag1565 Cone-Chr7:10746232 5.92E-73 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g336 . . . . . . . . . . . . . . Sed11g1242 . Cpe07g00119 Bhi04g00709 Tan02g2360 Cmetu03g0768 . . . . Cla08g01089 Cam08g1541 Cec08g1115 Cco08g1242 Clacu08g1244 . Cre08g1025 Cone4ag1366 Cone7ag1565 . . . . . Cme03g01501 . . . . . . . . . . . Cma12g00141 . . . . . . . . . . . . . . . . . . . Lsi08g00945 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006010 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 1 1 4 2 1 1 1 1 1 1 1 1 1 1 1 39