Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1572 ATGGATTCTGTAGACATCAGTGCATGTGATCCAACACTCCCTAAGGATGTTGGGAAAAATGAATTAACTATCCAGAAAAATGAAAGTACAGATCGGAAAAATAAAGCTAATGAAGAAAATGTTGATAAGGTAACCTTGGAAGATAAATTTGTTGATAAGGTGGATAATAGGCAGAATGCTCACGAAAATCTGGGCAATTATGTTGGACAAGTCGACTCTGGAAACAGAATAGATGAAGGTAGCAATGTGAAGTCTAAAGCGCATGAAGTATCTGACAATAAAACTGTACAACAAGAGTTTAGTGATAAGCTGGATGCAAGTAGGGATTTGAAGTCCGTAGCAGAAGAGGAAAGTATCAAGAAAGATGCAGGACAAAATAATGTGTGTAATTTGATGGATGAGGATGGAGATATGGAATCCACAGCTCAAGCAGAAGGAAATCAAACAACAGGGGAAGTGTTTGTTGAGGAAAAGGAACAGGAGCCTGTATTTGATGGGACAGAGTTTCTAGGGTCGTTAAATCCTGCTATGGAAACCCAGGGTGTTGCTGAGAAGGCAGCTGCGCTAAAAAAATTTGTTAGGGAGAAAAGTATAAATGCAGTCTCCACTTTTTTGCGTCGCCTTTCCATACCGAAAGACGAAGATGAACAGGTTGTTTCTGATCATGCATACAAGGATGTTTCAGATTCCGATAAAGACAATGAAGCTAAAGAAGCCTCTCAGAAAGCAGTGGATAAATCTGTATGGAATCCCTTATACTATATTAAGACGTCACGTGATTCTATCGTAGTATACCATAATGAGCAGGGGGAGGAAGTTAACAAAGAACTAGCACCACCTGTAGCGATGAAAGGAAGAATTATATTGTACACAAAGTTAGGTTGTCAAGAATGCAAGGATGTTCGATTATTTCTTTACTGGAAAAGGCTCAGATATGTTGAAATTAACATTGATATTTTCCCAAGTAGAAAGAGGGAATTGAAAGAGATTGCTGGGTCTTCTACTGTTCCAAAGGTTTTTTTTAATGAAATCATAATCGGAGGGTTTAGTGAGCTGAAGAGCTTGGATGAGTCTGGTGAGCTAGGTGAAAAGATTGATTATCTGGTTAATGAAGCACCATCTTCTCAAGCACCTTTACCACCTCTTTCTGGCGAAGATGATGAATCCACTAGTGGGACTGTTGATGAACTAGCTCTCATTGTCCAGAAAATGAAAGAATCTATTGAAGTTAAGGATCGATTTAATAAGATGCGTAGATTCACCAATTCTTTTCTAGGGTCCGAAGCAATTGATTTCTTATCAGAGGATCAGTACTTGGAAAGGGAAGAGGCTGTTGAATTTGGGCGAAAGCTAGCAAGCAAATTATTCTTTCAACATGTTCTTGAGGAGAATCTGCTTGAGGATGGAAATCACTTGTATCGATTCTTGGATGATGATCCGATTGTTTCATCCCAATGTCACAACATTCCAAAGGGTATAATAGATGTCAAACCAAAGCCCATAACAGAAATTGCATCACGGTTAAGATTTTTGTCTGATGCCATTTATGAAGCCTACACATCCAAAGACGGAAAGCATGTTGATTATAGAAGTATCCATGGGAGTGAGGAATTTGCGAGATACTTGAGAATAGTTGAGGAGCTCCAAAGAGTGGAAGTTCAAGATATGTCAAGGGAGGAGAAGCTTGCTTTCTTTATAAATCTCTACAACATGATGGCCATCCATGCTATATTAGAGTGGGGTCATCCGACTGGAGCACTAGAGCAAAGGAAATTATTCGGAGATTTTAAGTATGTTATTGGAGGGTCGACGTACTCACTTTCTGCTATTCAAAATGGCATCTTGAGGGGCAATCAGCGGCCACCATACACTCTTATGAAACCATTTGGTGAAAAAGATAAGCGTTCTAAGGTGGCTCTTCCTTACCCAGAACCCTTAATTCACTTTGCAGTGGTTTATGGTACCCGATCTGGGCCGGCTCTTCGATGCTATTCTCCTGCACACATTGACAGAGAACTGATGGAGGCAGCCTGCAGTTTCTTAAGAGGTGGTGGACTGCTTGTCGACGTGAACTCCAACTTGGCATCTTGTAGTAAGATTCTTAAATGGTTTAGCATAGATTTTGGGAAAAATGAGATCGAGGTCTTGAAGCATGCATCAAATTATTTGGAGCATGCGGAATCACAGGCATTATTGGAGTTGCTGGCCAACCTGCAGTTGAAAGTGATATATCAGCCTTATGATTGGGGTTTGAACTCCTAA 2262 40.19 MDSVDISACDPTLPKDVGKNELTIQKNESTDRKNKANEENVDKVTLEDKFVDKVDNRQNAHENLGNYVGQVDSGNRIDEGSNVKSKAHEVSDNKTVQQEFSDKLDASRDLKSVAEEESIKKDAGQNNVCNLMDEDGDMESTAQAEGNQTTGEVFVEEKEQEPVFDGTEFLGSLNPAMETQGVAEKAAALKKFVREKSINAVSTFLRRLSIPKDEDEQVVSDHAYKDVSDSDKDNEAKEASQKAVDKSVWNPLYYIKTSRDSIVVYHNEQGEEVNKELAPPVAMKGRIILYTKLGCQECKDVRLFLYWKRLRYVEINIDIFPSRKRELKEIAGSSTVPKVFFNEIIIGGFSELKSLDESGELGEKIDYLVNEAPSSQAPLPPLSGEDDESTSGTVDELALIVQKMKESIEVKDRFNKMRRFTNSFLGSEAIDFLSEDQYLEREEAVEFGRKLASKLFFQHVLEENLLEDGNHLYRFLDDDPIVSSQCHNIPKGIIDVKPKPITEIASRLRFLSDAIYEAYTSKDGKHVDYRSIHGSEEFARYLRIVEELQRVEVQDMSREEKLAFFINLYNMMAIHAILEWGHPTGALEQRKLFGDFKYVIGGSTYSLSAIQNGILRGNQRPPYTLMKPFGEKDKRSKVALPYPEPLIHFAVVYGTRSGPALRCYSPAHIDRELMEAACSFLRGGGLLVDVNSNLASCSKILKWFSIDFGKNEIEVLKHASNYLEHAESQALLELLANLQLKVIYQPYDWGLNS 753
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10770613 10774729 + Conep07aG0161900.1 Cone7ag1572 442168

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1572 753 CDD DEP 396 474 - -
Cone7ag1572 753 PRINTS Glutaredoxin signature 329 342 IPR014025 -
Cone7ag1572 753 PRINTS Glutaredoxin signature 287 305 IPR014025 -
Cone7ag1572 753 PRINTS Glutaredoxin signature 343 356 IPR014025 -
Cone7ag1572 753 Pfam Protein of unknown function, DUF547 554 681 IPR006869 -
Cone7ag1572 753 Pfam Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP) 408 475 IPR000591 GO:0035556(InterPro)
Cone7ag1572 753 SMART DEP_3 404 477 IPR000591 GO:0035556(InterPro)
Cone7ag1572 753 MobiDBLite consensus disorder prediction 21 41 - -
Cone7ag1572 753 MobiDBLite consensus disorder prediction 1 41 - -
Cone7ag1572 753 Coils Coil 19 39 - -
Cone7ag1572 753 Gene3D - 391 481 IPR036388 -
Cone7ag1572 753 PANTHER ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE 21 752 - -
Cone7ag1572 753 MobiDBLite consensus disorder prediction 79 96 - -
Cone7ag1572 753 SUPERFAMILY Thioredoxin-like 284 366 IPR036249 -
Cone7ag1572 753 MobiDBLite consensus disorder prediction 56 96 - -
Cone7ag1572 753 Gene3D Glutaredoxin 282 367 - -
Cone7ag1572 753 MobiDBLite consensus disorder prediction 60 78 - -
Cone7ag1572 753 ProSiteProfiles DEP domain profile. 404 477 IPR000591 GO:0035556(InterPro)
Cone7ag1572 753 ProSiteProfiles Glutaredoxin domain profile. 275 372 - -
Cone7ag1572 753 Pfam Glutaredoxin 287 343 IPR002109 -
Cone7ag1572 753 SUPERFAMILY Winged helix DNA-binding domain 395 485 IPR036390 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1572 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0662 Cone-Chr19:5621440 Cone7ag1572 Cone-Chr7:10770613 2.88E-24 dispersed
Cone7ag1572 Cone-Chr7:10770613 Cone9ag1311 Cone-Chr9:9839880 3.28E-15 dispersed
Cone7ag1572 Cone-Chr7:10770613 Cone13ag0665 Cone-Chr13:6619158 9.36E-110 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g352 . . . . . . . . . . . . . . Sed11g1510 . . Bhi04g02500 Tan11g0084 Cmetu09g1872 . Hepe02g3440 . Lcy10g2331 . . . . . . . . Cone7ag1572 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g00765 Cam11g0798 Cec11g0780 Cco11g0785 Clacu11g1059 Cmu11g0919 Cre11g1244 . . Chy03g00066 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007851 1 2 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 1 3 1 1 1 1 1 1 1 1 2 1 1 36