Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1577 ATGGGTCGTGCAAAGGTGGAGATGAAACGAATAGAAAACAATACAAATCGACGAGTAACGTATTCGAAGAGAAGAGATGGACTTATGAAGAAAGCCTATGAGCTTTCCATCCTCTGCGACATTGATCTCGCTCTCATCATGTTTTCTCCTTCCGGCCGCCTCGCTCATTTTTCCGGCAAAACAAGGATTGAGGATGTTCTTGCACGTTATATTAACCTGTCTGACCAGGAAAGAAAAAATGATATCCAAAACAAAGAGTATGTTCTAAGGATCCTGCAACAGTTGAGGAGTGAAAATGGCATTGGTCATCAGCTTGCTACGGCTGTTGACTCTGACAATATTGAGCAACTCCGGCAGGAAATTGATCGCCTAAAGCAGCTACTCCAAGTGGGTGAAGACCAAATCAGGATGTATGAACCGGACCCACTGAAACTATCATCTCTGCCTGAGATTGAATCATGCGAGAGAAATCTTGTTGAAACATTGGCATCTGTCATGCAGAGAAAGCAAGGGATGGTAAACTCGTTCCAGAATGAAGTTGTAGCTTGGTTATCTAATGATAGCTGCAGCCATTCCCAAATCTTCGATTCATCTCCCCCTCTCAAACCTATCACTTTCAGTTTAGTCAACGATCAGTTTTCACAAGTTGGAGGAATCAATACCTTAAATCTGAATCTACATAATACGGGCGGGGAGACACGTGTCACAAATCCAGATGACAGCGTGGACCTTCAAGCTGCATGGGCACCTTCTCTGCCTTACAATCTGACTGGACACCACCACTCTTCAGCCCCCTGCATGGAACCAACATTGTTCGACTCAATTGACCAGCTTGATTTGTGGGGATGGGCGTGCTATAGATGA 864 44.68 MGRAKVEMKRIENNTNRRVTYSKRRDGLMKKAYELSILCDIDLALIMFSPSGRLAHFSGKTRIEDVLARYINLSDQERKNDIQNKEYVLRILQQLRSENGIGHQLATAVDSDNIEQLRQEIDRLKQLLQVGEDQIRMYEPDPLKLSSLPEIESCERNLVETLASVMQRKQGMVNSFQNEVVAWLSNDSCSHSQIFDSSPPLKPITFSLVNDQFSQVGGINTLNLNLHNTGGETRVTNPDDSVDLQAAWAPSLPYNLTGHHHSSAPCMEPTLFDSIDQLDLWGWACYR 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10800518 10802989 + Conep07aG0162400.1 Cone7ag1577 442173

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1577 287 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone7ag1577 287 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone7ag1577 287 Gene3D - 13 93 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone7ag1577 287 Coils Coil 107 134 - -
Cone7ag1577 287 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 183 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cone7ag1577 287 FunFam MADS-box transcription factor 41 13 92 - -
Cone7ag1577 287 SUPERFAMILY SRF-like 2 85 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone7ag1577 287 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cone7ag1577 287 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone7ag1577 287 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone7ag1577 287 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone7ag1577 287 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone7ag1577 287 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1577 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0741 Cone-Chr12:6808995 Cone7ag1577 Cone-Chr7:10800518 2.39E-06 dispersed
Cone2ag0785 Cone-Chr2:33829864 Cone7ag1577 Cone-Chr7:10800518 3.10E-20 dispersed
Cone7ag1577 Cone-Chr7:10800518 Cone9ag0936 Cone-Chr9:4616470 1.78E-17 dispersed
Cone7ag1577 Cone-Chr7:10800518 Cone17ag0728 Cone-Chr17:5336181 1.42E-22 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi7g1111 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone7ag1577 . . . . . . . . . Bda14g01027 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone13ag0950 . 2 349 Type I MADS-box Gene Family AT2G03060 51.6 2.9e-87 319.7
Cone10ag1068 . 1 213 Type I MADS-box Gene Family AT5G60440 50.9 2.5e-46 183.3
Cone7ag1577 . 1 173 Type I MADS-box Gene Family AT1G77950 55.1 6.0e-49 191.8
Cone5ag1009 . 1 153 Type I MADS-box Gene Family AT5G48670 63.0 2.6e-49 193.4
Cone17ag0808 . 1 118 Type I MADS-box Gene Family AT5G48670 66.1 4.1e-42 169.5
Cone13ag0950 . 2 349 Type I MADS-box Gene Family AT2G03060 51.6 2.9e-87 319.7
Cone10ag1068 . 1 213 Type I MADS-box Gene Family AT5G60440 50.9 2.5e-46 183.3
Cone7ag1577 . 1 173 Type I MADS-box Gene Family AT1G77950 55.1 6.0e-49 191.8
Cone5ag1009 . 1 153 Type I MADS-box Gene Family AT5G48670 63.0 2.6e-49 193.4
Cone17ag0808 . 1 118 Type I MADS-box Gene Family AT5G48670 66.1 4.1e-42 169.5
Cone13ag0950 . 2 349 Type I MADS-box Gene Family AT2G03060 51.6 2.9e-87 319.7
Cone10ag1068 . 1 213 Type I MADS-box Gene Family AT5G60440 50.9 2.5e-46 183.3
Cone5ag1009 . 1 153 Type I MADS-box Gene Family AT5G48670 63.0 2.6e-49 193.4
Cone17ag0808 . 1 118 Type I MADS-box Gene Family AT5G48670 66.1 4.1e-42 169.5
Cone7ag1577 . 1 173 Type I MADS-box Gene Family AT1G77950 55.1 6.0e-49 191.8
Cone13ag0950 . 2 349 Type I MADS-box Gene Family AT2G03060 51.6 2.9e-87 319.7
Cone10ag1068 . 1 213 Type I MADS-box Gene Family AT5G60440 50.9 2.5e-46 183.3
Cone5ag1009 . 1 153 Type I MADS-box Gene Family AT5G48670 63.0 2.6e-49 193.4
Cone17ag0808 . 1 118 Type I MADS-box Gene Family AT5G48670 66.1 4.1e-42 169.5
Cone7ag1577 . 1 173 Type I MADS-box Gene Family AT1G77950 55.1 6.0e-49 191.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008266 1 1 2 1 1 1 1 1 1 1 1 1 1 2 2 1 1 3 1 1 1 1 1 1 1 0 1 1 1 2 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46575 PF00657 Lipase_GDSL 9.60E-36 CL0264 Cone TF