Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1577 ATGGGTCGTGCAAAGGTGGAGATGAAACGAATAGAAAACAATACAAATCGACGAGTAACGTATTCGAAGAGAAGAGATGGACTTATGAAGAAAGCCTATGAGCTTTCCATCCTCTGCGACATTGATCTCGCTCTCATCATGTTTTCTCCTTCCGGCCGCCTCGCTCATTTTTCCGGCAAAACAAGGATTGAGGATGTTCTTGCACGTTATATTAACCTGTCTGACCAGGAAAGAAAAAATGATATCCAAAACAAAGAGTATGTTCTAAGGATCCTGCAACAGTTGAGGAGTGAAAATGGCATTGGTCATCAGCTTGCTACGGCTGTTGACTCTGACAATATTGAGCAACTCCGGCAGGAAATTGATCGCCTAAAGCAGCTACTCCAAGTGGGTGAAGACCAAATCAGGATGTATGAACCGGACCCACTGAAACTATCATCTCTGCCTGAGATTGAATCATGCGAGAGAAATCTTGTTGAAACATTGGCATCTGTCATGCAGAGAAAGCAAGGGATGGTAAACTCGTTCCAGAATGAAGTTGTAGCTTGGTTATCTAATGATAGCTGCAGCCATTCCCAAATCTTCGATTCATCTCCCCCTCTCAAACCTATCACTTTCAGTTTAGTCAACGATCAGTTTTCACAAGTTGGAGGAATCAATACCTTAAATCTGAATCTACATAATACGGGCGGGGAGACACGTGTCACAAATCCAGATGACAGCGTGGACCTTCAAGCTGCATGGGCACCTTCTCTGCCTTACAATCTGACTGGACACCACCACTCTTCAGCCCCCTGCATGGAACCAACATTGTTCGACTCAATTGACCAGCTTGATTTGTGGGGATGGGCGTGCTATAGATGA 864 44.68 MGRAKVEMKRIENNTNRRVTYSKRRDGLMKKAYELSILCDIDLALIMFSPSGRLAHFSGKTRIEDVLARYINLSDQERKNDIQNKEYVLRILQQLRSENGIGHQLATAVDSDNIEQLRQEIDRLKQLLQVGEDQIRMYEPDPLKLSSLPEIESCERNLVETLASVMQRKQGMVNSFQNEVVAWLSNDSCSHSQIFDSSPPLKPITFSLVNDQFSQVGGINTLNLNLHNTGGETRVTNPDDSVDLQAAWAPSLPYNLTGHHHSSAPCMEPTLFDSIDQLDLWGWACYR 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10800518 10802989 + Conep07aG0162400.1 Cone7ag1577 442173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1577 287 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone7ag1577 287 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone7ag1577 287 Gene3D - 13 93 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone7ag1577 287 Coils Coil 107 134 - -
Cone7ag1577 287 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 183 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cone7ag1577 287 FunFam MADS-box transcription factor 41 13 92 - -
Cone7ag1577 287 SUPERFAMILY SRF-like 2 85 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone7ag1577 287 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cone7ag1577 287 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone7ag1577 287 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone7ag1577 287 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone7ag1577 287 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone7ag1577 287 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0741 Cone-Chr12:6808995 Cone7ag1577 Cone-Chr7:10800518 2.39E-06 dispersed
Cone2ag0785 Cone-Chr2:33829864 Cone7ag1577 Cone-Chr7:10800518 3.10E-20 dispersed
Cone7ag1577 Cone-Chr7:10800518 Cone9ag0936 Cone-Chr9:4616470 1.78E-17 dispersed
Cone7ag1577 Cone-Chr7:10800518 Cone17ag0728 Cone-Chr17:5336181 1.42E-22 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46575 PF00657 Lipase_GDSL 9.60E-36 CL0264 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1577 - - - 0.0