Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1578 ATGCATCAGAAAGTCAACAACTCGACTGAGGAAGAGCTTGAAACGAAGGAGATGGAAGTGACGAGTTTGTCATCTTCGCGAGATCAAGGAAAGGAAAATGACGATTACATTCACAAAGTTGGGATTCCTCCAAAACAACATTTCTACAATGAATTCATGTCCAATGTGAAAGAAACCCTATTTTCGGATGATCCTCTCCGTCCGTTCAAGGATCAAAGCAAATCACGGAAGCTCCTCCTTGGGGTCGAAGCCATTTTCCCGATCATTGAGTGGGGTCGGTCATACAATTTTGCTAAGTTTAGAGGGGACCTTATTGCTGGTCTCACTATTGCTAGTTTATGCATTCCACAAGATATTGGTTATGCAAAACTTGCAAATTTAGCCCCACAATATGGACTCTACTCGAGTTTTGTTCCGCCATTGGTATATGCTTTCATGGGTAGCTCAAGAGATATAGCAATAGGGCCAGTTGCTGTTGTTTCTCTCTTGTTAGGGACTCTACTCGAGAGTGAGATTGATCCTACTAAAAACCCGGATGGGTATAGACGCTTGGCATTTACGGCTACATTTTTCGCTGGAATAACTCAAGTTAGCCTTGGTATCTTGAGGTTGGGTTTCTTGATTGATTTTCTATCTCATGCTGCCATTGTTGGCTTCATGGGGGGGACTGCTATAACCATTGCTCTTCAACAGCTCAAGGGATTCCTTGGAATAAAAAAGTTCACGAAGAAAACGGACATCATCTCTGTTTTGCATTCTGTTTTTGGATCAGCCCTTCACGGATGGAACTGGCAGACGATAGTCATTGGAGCAAGCTTTTTATGTTTCCTTCTATTCGCTAAATTCATCGGAAAGAAGAAGAGGAGTCTTTTCTGGGTCCCGGCAGTTGCTCCATTGTTATCGGTTATCCTGTCCACGGTTTTCGTCTACATCACTCATGCCGAAAAGAAAGGGGTTGCAATTGTGAAACATATAGAGAAAGGAATCAATCCCCCATCTGTGAATGAAATTTATTTCAGCGGTCAATACCTTGCCAAAGGTTTCCGAATCGGTATTGTGGCCGGCGTGGTTGCTTTAACTGAAGCCATAGCTATTGGAAGAACATTTGCATCCATGAAGGATTATCAAATTGACGGGAACAAGGAAATGGTCGCGCTTGGAACAATGAACGTCGTCGGTTCATTAACTTCTTGTTATGTCGCAACAGGCTCATTTTCTCGCTCGGCCGTGAATTATATGGCTGGATGCCGAACTGCAATTTCAAACATTGTTATGGCCATAGTTGTACTCCTGACCTTGCAATTCTTGACGCCACTTTTCAAATACACCCCAAACGCCATTCTTTCTTCCATCATTATCTCTGCGGTGATCAACCTGGTAGATTTTCAGGCAGCAATTTTGATATGGAAGATTGATAAATTCGATTTTGTTGCGTGCATGGGAGCCTTCTTTGGTGTTATCTTTGCCTCCGTTGAAATTGGTCTTTTAATTGCAGTCTCTATATCCTTTGCTAAGATTCTCTTACAAGTTACAAGACCAAGGACGGCAATTCTTGGAAATATTCCGAGAACATCCGTGTATAGAAACATCCAACAATATCCGGATGCTACCAAGGTTCCGGGTGTTTTGATCGTTAGAGTTGACTCTGCCATTTACTTTTCTAACTCTAATTACATCAAGGAGAGGATATTGAGATGGTTGGCCGACGAAGAAGAACGAATCAAGAAAGACTACAAACAAAAAATCCAGTTTTTGATAGTTGAAATGTCACCTGTTACAGACATCGACACGAGCGGGATTCATGCATTTGAAGAATTGCATAGGAGTCTCAAAAAGAGAAATATTCAGCTTATTCTGGCAAATCCAGGTCCCGTAGTGATAGACAAGCTTCATGTGTCGGGTTTTCCGAATAAGATCGGTGAGGATAACATCTTTCTTACGGTGGCGGAAGCTGTTTCGTCCTGTTCCCCGAAAATTGTAGAAGAAGCTTGA 1992 42.32 MHQKVNNSTEEELETKEMEVTSLSSSRDQGKENDDYIHKVGIPPKQHFYNEFMSNVKETLFSDDPLRPFKDQSKSRKLLLGVEAIFPIIEWGRSYNFAKFRGDLIAGLTIASLCIPQDIGYAKLANLAPQYGLYSSFVPPLVYAFMGSSRDIAIGPVAVVSLLLGTLLESEIDPTKNPDGYRRLAFTATFFAGITQVSLGILRLGFLIDFLSHAAIVGFMGGTAITIALQQLKGFLGIKKFTKKTDIISVLHSVFGSALHGWNWQTIVIGASFLCFLLFAKFIGKKKRSLFWVPAVAPLLSVILSTVFVYITHAEKKGVAIVKHIEKGINPPSVNEIYFSGQYLAKGFRIGIVAGVVALTEAIAIGRTFASMKDYQIDGNKEMVALGTMNVVGSLTSCYVATGSFSRSAVNYMAGCRTAISNIVMAIVVLLTLQFLTPLFKYTPNAILSSIIISAVINLVDFQAAILIWKIDKFDFVACMGAFFGVIFASVEIGLLIAVSISFAKILLQVTRPRTAILGNIPRTSVYRNIQQYPDATKVPGVLIVRVDSAIYFSNSNYIKERILRWLADEEERIKKDYKQKIQFLIVEMSPVTDIDTSGIHAFEELHRSLKKRNIQLILANPGPVVIDKLHVSGFPNKIGEDNIFLTVAEAVSSCSPKIVEEA 663
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10808977 10812499 + Conep07aG0162500.1 Cone7ag1578 442174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1578 663 FunFam Sulfate transporter 31 512 658 - -
Cone7ag1578 663 Pfam STAS domain 533 651 IPR002645 -
Cone7ag1578 663 MobiDBLite consensus disorder prediction 1 34 - -
Cone7ag1578 663 CDD STAS_SulP_like_sulfate_transporter 533 648 - -
Cone7ag1578 663 SUPERFAMILY SpoIIaa-like 534 656 IPR036513 -
Cone7ag1578 663 Coils Coil 568 588 - -
Cone7ag1578 663 PANTHER SULFATE TRANSPORTER 56 655 IPR001902 GO:0005887(PANTHER)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone7ag1578 663 NCBIfam sulfate permease 87 651 IPR001902 GO:0016020(InterPro)|GO:0055085(InterPro)
Cone7ag1578 663 MobiDBLite consensus disorder prediction 1 18 - -
Cone7ag1578 663 Gene3D STAS domain 512 658 IPR036513 -
Cone7ag1578 663 ProSitePatterns SLC26A transporters signature. 129 150 IPR018045 GO:0008271(InterPro)|GO:0008272(InterPro)
Cone7ag1578 663 Pfam Sulfate permease family 100 481 IPR011547 GO:0016020(InterPro)
Cone7ag1578 663 ProSiteProfiles STAS domain profile. 532 655 IPR002645 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag1108 Cone-Chr11:8619655 Cone7ag1578 Cone-Chr7:10808977 2.68E-125 dispersed
Cone18ag0469 Cone-Chr18:2277303 Cone7ag1578 Cone-Chr7:10808977 1.27E-108 dispersed
Cone2ag0336 Cone-Chr2:1768979 Cone7ag1578 Cone-Chr7:10808977 1.65E-85 dispersed
Cone4ag0266 Cone-Chr4:1188017 Cone7ag1578 Cone-Chr7:10808977 4.26E-233 dispersed
Cone7ag0273 Cone-Chr7:1141534 Cone7ag1578 Cone-Chr7:10808977 2.04E-147 dispersed
Cone7ag0674 Cone-Chr7:3672639 Cone7ag1578 Cone-Chr7:10808977 1.71E-183 dispersed
Cone4ag1354 Cone-Chr4:11038032 Cone7ag1578 Cone-Chr7:10808977 0 wgd
Cone6ag1580 Cone-Chr6:12317946 Cone7ag1578 Cone-Chr7:10808977 9.32E-222 wgd
Cone7ag1578 Cone-Chr7:10808977 Cone9ag1499 Cone-Chr9:11017937 1.19E-222 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1578 K17470 - mdm:103401023 1078.93