Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1579 ATGAGTTCGAGTTTAAAGAAATCCCCTTCAAATGGCTACAATGAAGAGCAGCATATTAAGGTCAATGAGGTGCGAAGGTTGATAGGACCATTGTTGGGTATATTGTCCATTTATTGTTCTGATGCATCTATTTCCAGATATTTAAAGGCTCGAAACTGGAATGTGAAGAAGGCGGTAAAGATGCTGAAAGCATCTTTAAAGTGGAGGTCAGAATACAAGCCAGAAGAAATTCGATGGGATGAGGTAGCTCATGAAGCTGAGACGGGGAAAATATACCGGACAAATTATGTAGACAAGTACGGGCGTACAGTCCTTGTAATGAGACCGAGTCGCCAGAATTCGAGTTCAATAAAAGGACAAATCAAGTATTTGGTCTATTGCATGGAGAACGCTATTTTGAATCTGCCACCTGGCCAGGAACAGATGGTGTGGATGATTGATTTCCAAGGGTTTAGTTTGTCGAATATTTCAGTGAAGGTGACCAAGGAAACTGCCCATGTCCTACAAGAACATTACCCTGAACGCCTTGGTTTGGCTGTACTCTACAATCCCCCCAAGTTCTTCGAACCTTTCTGGACGGTGGTGAAGCCTTTTCTCGAACCAAAGACTGCAAACAAAGTAAAGTTTGTCTACTCAGATGACCTCAACACAAAGAAGATAATGGAGGATCTGTTTAACATGGACCAGTTGGAATCTGCATTTGGTGGGAATGATAACATGAGTTTCGAAATTACAAAATATGCGGAGAGGATGAGAGAAGATGACAAGAGGACTGCCATTTTCTGGAGGCAAGGAATCCCTCCTTCCTTGGCTGGCTCCGAACAAGTCCAGACAAGTGGCCCAGTGGATTTAACTGACTTAAACTCGTCTAATTCTGATTCTTCTGAAAAATGA 894 42.51 MSSSLKKSPSNGYNEEQHIKVNEVRRLIGPLLGILSIYCSDASISRYLKARNWNVKKAVKMLKASLKWRSEYKPEEIRWDEVAHEAETGKIYRTNYVDKYGRTVLVMRPSRQNSSSIKGQIKYLVYCMENAILNLPPGQEQMVWMIDFQGFSLSNISVKVTKETAHVLQEHYPERLGLAVLYNPPKFFEPFWTVVKPFLEPKTANKVKFVYSDDLNTKKIMEDLFNMDQLESAFGGNDNMSFEITKYAERMREDDKRTAIFWRQGIPPSLAGSEQVQTSGPVDLTDLNSSNSDSSEK 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10819370 10821118 - Conep07aG0162600.1 Cone7ag1579 442175

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1579 297 Pfam CRAL/TRIO, N-terminal domain 40 63 IPR011074 -
Cone7ag1579 297 SMART CRAL_TRIO_N_2 40 65 IPR011074 -
Cone7ag1579 297 FunFam Phosphatidylinositol transfer protein 3 2 267 - -
Cone7ag1579 297 SUPERFAMILY CRAL/TRIO N-terminal domain 7 81 IPR036273 -
Cone7ag1579 297 SUPERFAMILY CRAL/TRIO domain 79 257 IPR036865 -
Cone7ag1579 297 MobiDBLite consensus disorder prediction 270 297 - -
Cone7ag1579 297 CDD SEC14 87 237 IPR001251 -
Cone7ag1579 297 PANTHER GH16843P 8 264 IPR052578 GO:0008526(PANTHER)
Cone7ag1579 297 Pfam CRAL/TRIO domain 87 236 IPR001251 -
Cone7ag1579 297 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 79 242 IPR001251 -
Cone7ag1579 297 MobiDBLite consensus disorder prediction 269 297 - -
Cone7ag1579 297 SMART sec14_4 85 239 IPR001251 -
Cone7ag1579 297 Gene3D - 1 266 IPR036865 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1579 K26544 - - vvi:100250501 446.047
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1336 Cone-Chr17:9392753 Cone7ag1579 Cone-Chr7:10819370 2.57E-88 dispersed
Cone3ag0532 Cone-Chr3:2636544 Cone7ag1579 Cone-Chr7:10819370 9.65E-105 dispersed
Cone7ag1579 Cone-Chr7:10819370 Cone8ag0807 Cone-Chr8:8126927 5.49E-93 dispersed
Cone7ag1579 Cone-Chr7:10819370 Cone10ag0507 Cone-Chr10:2330088 1.96E-108 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g381 . . . Bda03g00501 Bpe02g00096 Bpe04g00456 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone7ag1579 . . . Csa04g01845 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011765 1 3 0 0 2 0 0 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 0 1 1 3 1 29