Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1581 ATGGCAGCTACGATGGGTTTCTACAGTAGGAGATCTGATATTGAATCGGACTTCATTAATGGAGGAGAGCTAATGGAAGCATTGGAACCTTTTATTAAAAGTGCCTCCCCTACCTCCTCCTATTCTTCTCCTTCTCCTTCTCCTTCTTACTCTTCCTTCTCTACACCATCTCCATATCCTTCCTCCCCTTTCTCTTCCTACAACTTCCTCTCCTTCTCCCCTGCCGTACAAACACACCACATCTTAACGCCGGAAGGTTGCTCTACCTCCATGAACCATGTATTTTCCGACGGGATTACGGCCCATTACCTAGACCAACCTTGCGGCGCGATCGGGCTCAACAGTCTAACCCAGGCCCAGATCCACCAGATCCAAGCCCAAATCAACCTCTCAACCCAACCCCAATTAACCCAAACCCAAACCTCTCAACAGTCTCTCAACTTTCTCAGCCCCAAACCTTTCCCGATGAAGAAAGCCGGCTCGCCGCCGAAATCGACCAAGCTTTACAGAGGCGTCAGGCAACGTCACTGGGGGAAATGGGTCGCTGAGATCCGGCTCCCTAAGAACCGTTCCCGGCTCTGGCTTGGCACGTTCGATACGGCTGAAGAAGCTGCTCTGGCGTATGACAAGGCGGCTTATATGCTCAGAGGCGACTTTGCTCGGCTCAACTTCCCTCACCTTAAGCACCAGGGCTCCTCTGTTGGAGGTGATTTCGGCGAGTACAAGCCCCTTCACTCCACTGTCGACGCTAAGCTTCAAGCTATTTGTCAAGGCTTGGCTGAAGCGCCTAAACAGGGGAAAGCAGAGAAGGCTGGTACCAAGAAACAGAGGACGGTTTCACAGCCAGAGGCTGGACCGGTTCCGGTTGTCGATGATGTGGGTTTGATGGGATCGGAGAGTTACTCTAAGGCGGAGGACGTGCCGTCGCCGGCAATGACTGACAGCGACGGATCAGGTGGGTCTTCACCTTTGTCGGAACTCACGTTTCCTGATTTTACAGAGTCGACATGGGATCAGGTGTCGGAGAATTTGATGTTGCAGAAGTACCCGTCGGAGATTGATTGGGCTTCAATTTTAGCTTCTTGA 1086 52.03 MAATMGFYSRRSDIESDFINGGELMEALEPFIKSASPTSSYSSPSPSPSYSSFSTPSPYPSSPFSSYNFLSFSPAVQTHHILTPEGCSTSMNHVFSDGITAHYLDQPCGAIGLNSLTQAQIHQIQAQINLSTQPQLTQTQTSQQSLNFLSPKPFPMKKAGSPPKSTKLYRGVRQRHWGKWVAEIRLPKNRSRLWLGTFDTAEEAALAYDKAAYMLRGDFARLNFPHLKHQGSSVGGDFGEYKPLHSTVDAKLQAICQGLAEAPKQGKAEKAGTKKQRTVSQPEAGPVPVVDDVGLMGSESYSKAEDVPSPAMTDSDGSGGSSPLSELTFPDFTESTWDQVSENLMLQKYPSEIDWASILAS 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10838004 10839941 + Conep07aG0162800.1 Cone7ag1581 442177

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1581 361 CDD AP2 167 227 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag1581 361 MobiDBLite consensus disorder prediction 262 330 - -
Cone7ag1581 361 SUPERFAMILY DNA-binding domain 168 226 IPR016177 GO:0003677(InterPro)
Cone7ag1581 361 SMART rav1_2 168 231 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag1581 361 Gene3D AP2/ERF domain 168 226 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag1581 361 PRINTS Ethylene responsive element binding protein signature 169 180 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag1581 361 PRINTS Ethylene responsive element binding protein signature 191 207 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag1581 361 ProSiteProfiles AP2/ERF domain profile. 168 225 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag1581 361 FunFam Ethylene-responsive transcription factor 2 167 226 - -
Cone7ag1581 361 Pfam AP2 domain 168 217 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag1581 361 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 15 358 IPR051758 GO:0005634(PANTHER)|GO:0043565(PANTHER)
Cone7ag1581 361 MobiDBLite consensus disorder prediction 36 55 - -
Cone7ag1581 361 MobiDBLite consensus disorder prediction 314 330 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1581 K09286 - - rcu:8263046 338.576
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag1407 Cone-Chr3:32935417 Cone7ag1581 Cone-Chr7:10838004 1.50E-30 dispersed
Cone6ag0849 Cone-Chr6:4331686 Cone7ag1581 Cone-Chr7:10838004 1.79E-37 dispersed
Cone7ag0394 Cone-Chr7:1756379 Cone7ag1581 Cone-Chr7:10838004 1.56E-30 dispersed
Cone7ag1581 Cone-Chr7:10838004 Cone9ag0847 Cone-Chr9:4140632 5.27E-38 dispersed
Cone17ag1230 Cone-Chr17:8918498 Cone7ag1581 Cone-Chr7:10838004 3.23E-90 wgd
Cone20ag0497 Cone-Chr20:2660368 Cone7ag1581 Cone-Chr7:10838004 2.95E-84 wgd
Cone4ag1350 Cone-Chr4:11006044 Cone7ag1581 Cone-Chr7:10838004 2.27E-192 wgd
Cone6ag1574 Cone-Chr6:12274587 Cone7ag1581 Cone-Chr7:10838004 2.56E-74 wgd
Cone7ag1581 Cone-Chr7:10838004 Cone9ag1493 Cone-Chr9:10975569 3.32E-73 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g387 . Blo12g00700 Bda01g00877 Bda03g00498 Bpe02g00098 Bpe04g00453 . Bma01g02621 Cmo05g00511 . . . . Car12g00137 Sed04g0131 . Cpe07g00124 Bhi04g00746 Tan02g2374 Cmetu03g0001 . Hepe10g0515 . Lcy13g1578 Cla08g01096 Cam08g1550 Cec08g1123 Cco08g1250 Clacu08g1252 . Cre08g1034 Cone4ag1350 Cone7ag1581 Cone17ag1230 Cone20ag0497 . Csa04g01841 . Cme03g01510 Blo17g00125 Blo18g00138 . . Bpe02g01114 . Bma01g01424 . . . . Cma12g00148 Cma05g00489 Car05g00437 . . . . . . . . . . . . . . . . . Lsi08g00953 . Chy03g01019 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001774 1 2 2 2 2 1 4 2 2 2 2 2 4 2 2 3 2 4 4 2 2 2 2 3 2 2 2 3 2 1 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46576 PF00010 HLH 1.00E-05 No_clan Cone TF