Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1582 ATGATAAATCAGAAACCCTTAATCGGACTCGCCGATTACTTAATCAACAAACACAACTTCTCCGTCGAATCAGCTCTTAAAGCCTCCTCTGCGATCTCACATCTAAAAAAACCTAAGCAAGCCGATTCCGTACTATCATTCCTCAAGCAGGTCGGTTTCTCCAAAATCCAGATCGAGAAAGTGATCCAAGTCATCCCTCGAGTCCTCTCTTCCAATCTCGCCAAAACAATCGAGCACAAAATCAAGCTCTTTCAAGACTCGGGCTTTTCCGCTTCCGACATTTCCGAGATCATCTCCTCCGACCCTTGGATCCTCACCCGAAGCGCAGTGAACCGGCTCGGCCCATCAATCTCGAGCTTGAAAACCATTCTGGGCTCAGATGAAGGCATCTCTGAGGTGTTGAAGAGTAGTGGATCCTTTTTAAAGCATGATTTAGAGAAGACATTCATTCCTAACATAGAGTTCTTAAAGAACTTTGGAATTACGGAATCACTAATTATCAGGTACGCGCTGTTTATCTTTCCTAGGTTTTTGCTTCATAAGCCAGAAAGGATTATAGATTTTGTGGAAAGAGTGGATAAAATGGGGATGGATAGAAAGTCTAATAAGTACCTTTCAGCTGTTTGGACAATAAGTTCTATGTCTAGAGAGAATTGGGACTTGAAACTGAAACTGTTTCAGACTCTGGGTTTTTCGAAGGATGAGATTTTGCGGGTGTTCATCAAGAAGCCTCAAGTTTTTGCATTGTCTGAGAAGAAAATTAGGGATGGGATTCAGGCTCTGATTAGTGCTGAGAAATGTGGGATTTCTTATGTGATTAAGCACCCTGAATTGCTCATTTTTAGCGTCGAGCGGAGGCTGAAACCTAGATTGAAAGTTTTAGATGTTCTTGTGAAGAAGAATGTGATTCAGAAACGGCTTACGCCGTCTACAATGTGCAAGATGTCTGATAAGAAGTTCGTCGAGACATATGTATCCCCTTATTTAGATGAAGTTGGTGAGCTATATCAACAACATGTAGCTAGTGGTCTATCCTAG 1038 42.0 MINQKPLIGLADYLINKHNFSVESALKASSAISHLKKPKQADSVLSFLKQVGFSKIQIEKVIQVIPRVLSSNLAKTIEHKIKLFQDSGFSASDISEIISSDPWILTRSAVNRLGPSISSLKTILGSDEGISEVLKSSGSFLKHDLEKTFIPNIEFLKNFGITESLIIRYALFIFPRFLLHKPERIIDFVERVDKMGMDRKSNKYLSAVWTISSMSRENWDLKLKLFQTLGFSKDEILRVFIKKPQVFALSEKKIRDGIQALISAEKCGISYVIKHPELLIFSVERRLKPRLKVLDVLVKKNVIQKRLTPSTMCKMSDKKFVETYVSPYLDEVGELYQQHVASGLS 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10842244 10843387 - Conep07aG0162900.1 Cone7ag1582 442178

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1582 345 PANTHER CGI-12 PROTEIN-RELATED 12 331 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cone7ag1582 345 FunFam Mitochondrial transcription termination factor-like 109 332 - -
Cone7ag1582 345 Pfam mTERF 24 320 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cone7ag1582 345 SMART mt_12 269 303 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cone7ag1582 345 SMART mt_12 237 267 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cone7ag1582 345 SMART mt_12 202 232 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cone7ag1582 345 SMART mt_12 59 90 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cone7ag1582 345 SMART mt_12 168 198 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cone7ag1582 345 SMART mt_12 131 162 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cone7ag1582 345 SMART mt_12 95 127 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cone7ag1582 345 SMART mt_12 23 54 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cone7ag1582 345 Gene3D Transcription termination factor 3, mitochondrial 109 338 IPR038538 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1582 K15031 - - vvi:104882482 348.591
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1349 Cone-Chr4:11001931 Cone7ag1582 Cone-Chr7:10842244 1.63E-73 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g391 . . . . . . . . . . . . . . . . Cpe07g00108 . . . . . . . . . . . . . . Cone4ag1349 Cone7ag1582 . . . . . . . . . . . . . . . . . Cma12g00128 . . . . . . . . . . . . . . . . . . . Lsi08g00930 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0020805 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 2 4
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46577 PF00646 F-box 1.40E-08 CL0271 Cone TR