Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1584 ATGGAGAATTATGCAGTACAAAATGATGAAGCTGGTTGTGGCTTTATAGGTGGGATCTTCCATCTTCGATATTGCAAGTATTGGCTTAGAAAATCTTCTGTTCATTCACTTCCTCCCACTAACTACAACTTTAACGACTGCTCCCCCGATTTGGCTAAACCTTCACTAAAGAATATTGAACCAAAACCAGCAACCAAAAAGCCTGCAATTACTAACACTACTCATAAAAGAAATGAAACTAGAAGTCCTTCTGATGCTACAAGAAGCTCGACGTCATCTTCCTCCTCGTCCGGCCCGACCCAGCCCAAGCCGGCACACGGCCAGCAGCAACCGAACGATCAAAGCCAGGCTTTGGTCCGAGTAGGCCGCTTGGGAGGTAATTTGAAACAGTCCAAAACAGTGAGTTTTTCGACAAGTATGAATTCTCACAGAATGACAAAAGCTAAGAGCTTGGACTATGTTTCAACTGGTAATAATATGGGCAATATTGTGAGGAGGAATAGCGGTTCGTATAAGTTAGATCCTGATGTTCTGAAATGCATGGGAAATGAGGTTTATAAGCAGGGCAGATTCCAAGAGGCTTTGAGTTTATATGATAAAGCAATTGGTTTGGGTTCAGACAAGGCAGTTTATTATAGCAACAAAAGTGCAGCTTTGATCGGATTGGACCGGCTTGTGGAGGCTGTCGAAGCCTGCAAACAGGCTTTAAGGCTCGACCCTTTTTATCACAAAGCCCATCATCGATTGGCAACGTTGTATCTCAGATTTGGAGAGGTTGAGAAAGCATTGGATCATTTCGAACAATCTGGTTCACAATTTGAGGGGGAAGAGATTGAGAAGGCTCAGGCTCTTCAGAATTGTCTAAGACGGTGCGATGAAGCTAGGAAATCAAAAGAGTGGACCACTTTGTTAAACGAAACCCAATCTGCTATGGTGTCTGGTGCTAATTCATCTCATAAGGTGTATGCCCTACAAGCAGAGGCATTACTGAGGCTACAAAGACACCAAGAGGCATATACCACCTACCGGAAAGGCCGGAGTTTAAGCATCGGCTCTCTACCGAGTAGTATATTCAACTTGGCCGATTGCACTTACATTTTAGTTATTGAAACTGAGCTCTACATGACTATGGGCAGATTTGAGGAAGCCATGGCGGCAGCAAATGGAGCGGCAAAAATTGATCCTACGAACAAGGAAGTGATTGCAATGGTGAAGAGGGCCAGAGCAATTTCATTAGCCAGATTGAGAGGTAACAGTCTTTTCAAGGAATCCAAGTTTTTGGAGGCGTTTACTCTTTACAGTGAAGGACTTGAGCTCGATAGGTCCAACTCGGTTTTGTTATGCAACCGGGCGGCTTGCCGGTCAAAGCTCGGTCAATTTGAAAAAGCCGTTGAAGATTGCACGGCTGCTCTCCGTGTACAACCTTGTTACATTAAAGCTAGGCTCCGCAGGGCTCATTGCAATGCTCAGTTGGAAAGATGGGAAGCTAGTATCGAGGACTATGAGGTACTATTGATGAGAGAGAGTCCAGGGAATGAGGAGGTGGGCCGGGCCCTGTTGGAGGCTCAGGTCCAGGTTAAGAAGCAACGTGGTGAAGACGTTGTACCAAGGGGAATGAAAATGACTCATGCTACCGAATTGGTCAAAGTAGAAGCTCCATAA 1662 45.13 MENYAVQNDEAGCGFIGGIFHLRYCKYWLRKSSVHSLPPTNYNFNDCSPDLAKPSLKNIEPKPATKKPAITNTTHKRNETRSPSDATRSSTSSSSSSGPTQPKPAHGQQQPNDQSQALVRVGRLGGNLKQSKTVSFSTSMNSHRMTKAKSLDYVSTGNNMGNIVRRNSGSYKLDPDVLKCMGNEVYKQGRFQEALSLYDKAIGLGSDKAVYYSNKSAALIGLDRLVEAVEACKQALRLDPFYHKAHHRLATLYLRFGEVEKALDHFEQSGSQFEGEEIEKAQALQNCLRRCDEARKSKEWTTLLNETQSAMVSGANSSHKVYALQAEALLRLQRHQEAYTTYRKGRSLSIGSLPSSIFNLADCTYILVIETELYMTMGRFEEAMAAANGAAKIDPTNKEVIAMVKRARAISLARLRGNSLFKESKFLEAFTLYSEGLELDRSNSVLLCNRAACRSKLGQFEKAVEDCTAALRVQPCYIKARLRRAHCNAQLERWEASIEDYEVLLMRESPGNEEVGRALLEAQVQVKKQRGEDVVPRGMKMTHATELVKVEAP 553
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10847042 10849012 - Conep07aG0163100.1 Cone7ag1584 442180

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1584 553 SMART tpr_5 410 443 IPR019734 GO:0005515(InterPro)
Cone7ag1584 553 SMART tpr_5 243 276 IPR019734 GO:0005515(InterPro)
Cone7ag1584 553 SMART tpr_5 478 510 IPR019734 GO:0005515(InterPro)
Cone7ag1584 553 SMART tpr_5 209 242 IPR019734 GO:0005515(InterPro)
Cone7ag1584 553 SMART tpr_5 175 208 IPR019734 GO:0005515(InterPro)
Cone7ag1584 553 SMART tpr_5 364 397 IPR019734 GO:0005515(InterPro)
Cone7ag1584 553 SMART tpr_5 444 477 IPR019734 GO:0005515(InterPro)
Cone7ag1584 553 SMART tpr_5 319 352 IPR019734 GO:0005515(InterPro)
Cone7ag1584 553 MobiDBLite consensus disorder prediction 84 113 - -
Cone7ag1584 553 SUPERFAMILY TPR-like 414 527 IPR011990 GO:0005515(InterPro)
Cone7ag1584 553 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 65 542 IPR044534 GO:0005737(PANTHER)
Cone7ag1584 553 MobiDBLite consensus disorder prediction 54 113 - -
Cone7ag1584 553 Pfam Tetratricopeptide repeat 373 397 IPR019734 GO:0005515(InterPro)
Cone7ag1584 553 Pfam Tetratricopeptide repeat 245 268 IPR011717 GO:0042802(InterPro)
Cone7ag1584 553 ProSiteProfiles TPR repeat profile. 175 208 IPR019734 GO:0005515(InterPro)
Cone7ag1584 553 Gene3D Tetratricopeptide repeat domain 174 531 IPR011990 GO:0005515(InterPro)
Cone7ag1584 553 Pfam Tetratricopeptide repeat 182 242 - -
Cone7ag1584 553 Pfam Tetratricopeptide repeat 456 512 - -
Cone7ag1584 553 SUPERFAMILY TPR-like 175 400 IPR011990 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1584 K09527 - - csv:101206173 501.901
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1406 Cone-Chr4:11279034 Cone7ag1584 Cone-Chr7:10847042 3.08E-12 dispersed
Cone7ag1534 Cone-Chr7:10607628 Cone7ag1584 Cone-Chr7:10847042 2.33E-12 dispersed
Cone7ag1584 Cone-Chr7:10847042 Cone9ag0214 Cone-Chr9:917068 6.20E-99 dispersed
Cone4ag1347 Cone-Chr4:10995561 Cone7ag1584 Cone-Chr7:10847042 0 wgd
Cone6ag1570 Cone-Chr6:12252524 Cone7ag1584 Cone-Chr7:10847042 1.32E-98 wgd
Cone7ag1584 Cone-Chr7:10847042 Cone9ag1490 Cone-Chr9:10951437 1.24E-118 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g393 . Blo12g00702 . Bda03g00496 Bpe02g00100 Bpe04g00451 . Bma01g02620 . . Cma01g01421 Cma09g00648 . . . Cpe06g00508 . . . . . . . . . . . . . . . Cone4ag1347 Cone7ag1584 . . Lsi04g02348 Csa04g01848 . . . . Bda11g00760 . . . . . Sed12g1412 Cmo01g01471 Cmo09g00631 . . . Car09g00576 . Cpe02g00525 Bhi09g02612 Tan01g3963 Cmetu07g1933 . Hepe01g2241 Mch11g0789 . Cla11g01498 Cam11g1554 Cec11g1586 Cco11g1582 Clacu11g1712 Cmu11g1531 Cre11g1947 . . Chy07g00705 Cme07g00929
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005323 2 1 2 2 2 0 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 39