Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1605 ATGGACGGGAGTGCTCCGTACAATCCACGTACTGTCGAGGAGGTTTTCAGGGATTTCAAGGGTCGTAGAGCCGGCATGGTTAAAGCTCTCACTACTGATGTTGAAGAGTTCTTTCAACAGTGCGATCCTGAGAAGGAAAATCTTTGCCTCTATGGATTTCCCAGTGAACAATGGGAAGTTAATTTACCCGCCGAGGAGGTGCCTCCGGAGCTTCCAGAACCCGCACTTGGTATCAACTTCGCCCGAGATGGAATGCAGGAAAAGGACTGGTTATCCTTGGTAGCTGTCCACAGTGATGCCTGGTTACTTGCTGTGGCCTTCTATTTTGGTGCTAGGTTTGGATTTGACAAAGCTGACAGGAAACGCCTTTTTAATATGATCAATGATCTTCCGACAATATTTGAGGTTGTAACAGGAACAGCCAAGAAGCAAGTCAAGGACAAGTCATCTGTTTCAAATCACAGCAGCAACAAATCTAAGTTAAATTCAAAGCGTGCTTCTGAACCTCAAGGAAAGTTTTCAAAGGTAATGCAACCAAAGGACGAGGAAGAGGAGGGTTTGGAAGAGGAAGAAGAAGAAGATGAACATGGAGAGACACTTTGCGGAGCTTGTGGAGAGAACTATGCATCTGATGAGTTTTGGATCTGCTGTGATATCTGTGAGAAGTGGTTCCATGGGAAGTGCGTGAAGATCACCCCAGCAAGGGCAGAGCATATCAAGCAGTACAAATGTCCCTCTTGCAGCAACAAGAGATCCCGACCCTGA 765 46.41 MDGSAPYNPRTVEEVFRDFKGRRAGMVKALTTDVEEFFQQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKADRKRLFNMINDLPTIFEVVTGTAKKQVKDKSSVSNHSSNKSKLNSKRASEPQGKFSKVMQPKDEEEEGLEEEEEEDEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRSRP 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10940102 10942743 - Conep07aG0165300.1 Cone7ag1605 442201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1605 254 CDD PHD_AL_plant 200 250 IPR044104 -
Cone7ag1605 254 SMART PHD_3 200 248 IPR001965 -
Cone7ag1605 254 SUPERFAMILY FYVE/PHD zinc finger 189 252 IPR011011 -
Cone7ag1605 254 MobiDBLite consensus disorder prediction 145 194 - -
Cone7ag1605 254 Pfam Alfin 11 138 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Cone7ag1605 254 ProSiteProfiles Zinc finger PHD-type profile. 198 250 IPR019787 -
Cone7ag1605 254 MobiDBLite consensus disorder prediction 145 169 - -
Cone7ag1605 254 ProSitePatterns Zinc finger PHD-type signature. 201 247 IPR019786 -
Cone7ag1605 254 PANTHER CPG BINDING PROTEIN 8 253 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Cone7ag1605 254 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 249 IPR013083 -
Cone7ag1605 254 FunFam PHD finger alfin-like protein 193 249 - -
Cone7ag1605 254 Pfam PHD-finger 201 247 IPR019787 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0390 Cone-Chr10:1840519 Cone7ag1605 Cone-Chr7:10940102 5.38E-93 dispersed
Cone3ag0883 Cone-Chr3:4532881 Cone7ag1605 Cone-Chr7:10940102 3.35E-124 dispersed
Cone4ag0041 Cone-Chr4:221832 Cone7ag1605 Cone-Chr7:10940102 2.25E-64 dispersed
Cone4ag0807 Cone-Chr4:5105854 Cone7ag1605 Cone-Chr7:10940102 3.34E-151 dispersed
Cone7ag0758 Cone-Chr7:4685575 Cone7ag1605 Cone-Chr7:10940102 1.17E-151 dispersed
Cone7ag1605 Cone-Chr7:10940102 Cone9ag1035 Cone-Chr9:5544361 6.44E-37 dispersed
Cone4ag1687 Cone-Chr4:12572850 Cone7ag1605 Cone-Chr7:10940102 6.29E-167 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46578 PF13499 EF-hand_7 6.20E-10 CL0220 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1605 K26274 - rcu:8258558 464.151