Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1617 ATGGCATTTCGTGTTGAGTTCGTTCTTCTGGCTTTTCTCTTTTCTGTGAGCGTCGGTTTGGTGACTTCGGACGAGGGAGCGACGCTGTTGGAGATAAAGAAGTCATTCAGGGATGTGGACAATGTTCTATATGACTGGGTTGACTCGCCATCTTCAGATTATTGTGCGTGGAGAGGGATCGCATGCGACAATGTCACCTTCAATGTTATTGCACTTAATTTGTCTGGCCTGAATCTTGATGGGGAGATTTCACCTGCAATTGGAAATCTCAAAAGCTTGCTGTCCATCGATTTAAAGGAAAATAAGCTATCTGGCCAGATTCCAGATGAGATCGGCGATTGTGCTTCAATGAAGAATCTGGATCTGTCATTTAACCAGATATACGGAGACATTCCCTTTTCAATATCCAAGCTGAAACAACTTGAATTGCTAGTCTTGAAGAATAATCGCTTGATTGGACCAATTCCTTCAACCTTGTCTCAGATTCCAAACTTGAAGGTTTTAGATCTGGCGCAGAATAATCTTACTGGGGAGATACCAAGGCTTATATACTGGAATGAAGTTCTTCAGTATCTTGGTTTGCGAGGGAACAATTTAGTTGGTCCACTCTCTCCAGATATGTGCCAGCTCACTGGATTATGGTATTTCGATGTGAGAAACAACAGTTTAACTGGAAGCATACCTCAAAATATCGGCAACTGTACTGCCTTCCAGGTCTTAGACTTGTCCTACAACCAGTTAACTGGAGAGATTCCATTCAATATTGGTTTCCTGCAAGTAGCCACTTTATCACTGCAAGGAAATCGGCTTTCTGGTCAAATTCCATCAGTGATTGGTCTCATGCAGGCTCTTGCTGTACTAGACTTGAGCTGCAACATGTTAAGTGGAAAAATCCCAGCTATCTTGGGAAATTTGACTTACACGGAGAAACTATATTTGCACAGCAACAGGTTAACTGGGCCTATTCCTTCGGAGCTTGGAAATATGACAAAGCTTCATTACTTGGAATTGAATGATAATCATTTAACGGGGCATATTCCAGCTGAACTTGGGAAGCTCACTGACTTGTTTGACCTGAATCTTGCTAATAACAATCTTGATGGCCCCATTCCTGATAACCTTAGTTCATGCACAAATCTTAACAGCCTCAATGTACATGGGAACAAGTTGTATGGGTCTATTCCACCTGCTTTCCAAAGGCTAGAGAGTATGACATATCTAAATCTTTCCTCAAACAATCTTTGGGGACCCATTCCCATTGCACTGTCACGGATTGGCAACTTGGATACTCTGGATATTTCTAGTAACAAAATAAATGGCTCTATTCCTTCCTCCCTTGGCGATTTGGAGCATCTCCTAAAGCTGAATTTGAGCAGAAACCATTTAACGGGATTCATTCCAGCCGAGTTTGGAAATCTAAGAAGTGTAATGGAAATAGATCTTTCAAATAATCACCTCTCGGGCTCAGTTCCTGACGAACTTAGCCAGCTTCAGAACATGTTTTCCCTGAAACTAGAAAACAACAATTTATCAGGAGATATCAGCTCATTGATGAATTGCTTGAGTCTTACCCAACTAAATGTTTCCTACAATAACCTTAGCGGTGACATCCCTACAAGCAACAACTTCTCAAGGTTTTCCTCAGACAGTTTCATTGGTAATCCTGGTCTCTGTGGGTATTGGCTCAACTATCATTGTCACGAGTCACGTCCAACTGAGCGAGTCACAATTTCTAAAGCAGCTATCATAGGGATTGCTGTTGGTGCCCTTTTGATTCTTCTCATGATCTTGGTGGCTGCATGCCGACCAAACAAACCCATGCCTTTTCTTGATGGATCACTTGATAAACCAGTTTATTACCCAGCACCAAAGCTCGTGATCCTTAACATGAACATGGCTCTTCATGTGTACGATGACATCATGAGAATGACCGAGAACTTGAGTGAGAAGTATATAATTGGTTATGGCGCATCCAGTACAGTGTACAAATGTGTTCTTAAGAATTGTAAGCCAGTGGCCATTAAAAGAATCTACACTCATTATCCACAGAGTTTGAAGGAATTTGAGACAGAACTTGAAACAGTAGGAAGCATCAAGCATAGGAATTTAGTCAGTCTTCAAGGTTACTCCTTGTCCTCCTTTGGAAACCTTCTCTTCTATGACTACATGGAAAATGGAAGTCTTTGGGATCTTCTTCACGGTCCGAGCAAGAAGAAAAAACTAGACTGGGACACTAGACTTAGGATTGCTCTTGGATCAGCTCAAGGGCTAGCATATCTTCACCATGACTGTTGTCCCAGAATTATCCATAGGGATGTGAAGTCATCTAACATTCTATTGGACAAGGAATTTGAGGCCCATCTTTCAGATTTTGGTATTGCCAAAAATCTATGCCCCTCAAAATCTCACACTTCTACTTACGTTATGGGCACTATTGGCTATATCGATCCCGAATATGCTCGAACTTCTCGTCTCACTGAAAAGTCCGATGTTTATAGCTATGGCATTGTTCTACTTGAATTGCTTACAGGAAAGAAAGCAGTGGACGACGACTCCAATCTTCATCATCTGATTTTATCGAAGACAGCAAATAATGCTGTTATGGAGACAGTTGATCCTGAGGTTACAGCTACCTGCAAGGATCTTGGAGCTATAAAGAAGGTTTTTCAGCTTGCCCTTTTATGCACGAAAAGACAATCGTCCGATCGGCCTACTATGCACGAAGTGACCCGGGTCCTTGGAAGTTTAGTACCGTTGGATACACCACCACCAAAACAAACAGTACAAACTCCTACAGGAACTACTCTGGCTCCAGTTTCCAAACTGCCTTCTTACATGGAAGAGTATGCAAATCTAAAAGCTTCCAATATGTTGAATTACCCAACCGTGAGCACCTCAGACGCTCAACTGTTCCTGAAATTCGGGGAGGTAATATCTCAGAATAGTGAGTGA 2952 41.97 MAFRVEFVLLAFLFSVSVGLVTSDEGATLLEIKKSFRDVDNVLYDWVDSPSSDYCAWRGIACDNVTFNVIALNLSGLNLDGEISPAIGNLKSLLSIDLKENKLSGQIPDEIGDCASMKNLDLSFNQIYGDIPFSISKLKQLELLVLKNNRLIGPIPSTLSQIPNLKVLDLAQNNLTGEIPRLIYWNEVLQYLGLRGNNLVGPLSPDMCQLTGLWYFDVRNNSLTGSIPQNIGNCTAFQVLDLSYNQLTGEIPFNIGFLQVATLSLQGNRLSGQIPSVIGLMQALAVLDLSCNMLSGKIPAILGNLTYTEKLYLHSNRLTGPIPSELGNMTKLHYLELNDNHLTGHIPAELGKLTDLFDLNLANNNLDGPIPDNLSSCTNLNSLNVHGNKLYGSIPPAFQRLESMTYLNLSSNNLWGPIPIALSRIGNLDTLDISSNKINGSIPSSLGDLEHLLKLNLSRNHLTGFIPAEFGNLRSVMEIDLSNNHLSGSVPDELSQLQNMFSLKLENNNLSGDISSLMNCLSLTQLNVSYNNLSGDIPTSNNFSRFSSDSFIGNPGLCGYWLNYHCHESRPTERVTISKAAIIGIAVGALLILLMILVAACRPNKPMPFLDGSLDKPVYYPAPKLVILNMNMALHVYDDIMRMTENLSEKYIIGYGASSTVYKCVLKNCKPVAIKRIYTHYPQSLKEFETELETVGSIKHRNLVSLQGYSLSSFGNLLFYDYMENGSLWDLLHGPSKKKKLDWDTRLRIALGSAQGLAYLHHDCCPRIIHRDVKSSNILLDKEFEAHLSDFGIAKNLCPSKSHTSTYVMGTIGYIDPEYARTSRLTEKSDVYSYGIVLLELLTGKKAVDDDSNLHHLILSKTANNAVMETVDPEVTATCKDLGAIKKVFQLALLCTKRQSSDRPTMHEVTRVLGSLVPLDTPPPKQTVQTPTGTTLAPVSKLPSYMEEYANLKASNMLNYPTVSTSDAQLFLKFGEVISQNSE 983
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10987657 10993813 + Conep07aG0166600.1 Cone7ag1617 442213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1617 983 Pfam Leucine Rich Repeat 164 183 IPR001611 GO:0005515(InterPro)
Cone7ag1617 983 Pfam Leucine Rich Repeat 522 540 IPR001611 GO:0005515(InterPro)
Cone7ag1617 983 Pfam Leucine Rich Repeat 358 377 IPR001611 GO:0005515(InterPro)
Cone7ag1617 983 Pfam Leucine Rich Repeat 284 305 IPR001611 GO:0005515(InterPro)
Cone7ag1617 983 Pfam Leucine Rich Repeat 213 234 IPR001611 GO:0005515(InterPro)
Cone7ag1617 983 Pfam Leucine Rich Repeat 92 114 IPR001611 GO:0005515(InterPro)
Cone7ag1617 983 Pfam Leucine Rich Repeat 331 353 IPR001611 GO:0005515(InterPro)
Cone7ag1617 983 Pfam Leucine Rich Repeat 117 138 IPR001611 GO:0005515(InterPro)
Cone7ag1617 983 Pfam Leucine Rich Repeat 238 257 IPR001611 GO:0005515(InterPro)
Cone7ag1617 983 Pfam Leucine Rich Repeat 404 423 IPR001611 GO:0005515(InterPro)
Cone7ag1617 983 Pfam Leucine Rich Repeat 309 329 IPR001611 GO:0005515(InterPro)
Cone7ag1617 983 Pfam Leucine Rich Repeat 379 401 IPR001611 GO:0005515(InterPro)
Cone7ag1617 983 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 187 296 - -
Cone7ag1617 983 SMART serkin_6 647 913 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone7ag1617 983 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 22 186 - -
Cone7ag1617 983 SUPERFAMILY L domain-like 24 258 - -
Cone7ag1617 983 Pfam Leucine rich repeat N-terminal domain 23 63 IPR013210 -
Cone7ag1617 983 Gene3D Ribonuclease Inhibitor 187 297 IPR032675 -
Cone7ag1617 983 Gene3D Ribonuclease Inhibitor 298 570 IPR032675 -
Cone7ag1617 983 Pfam Protein kinase domain 650 910 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone7ag1617 983 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 723 923 - -
Cone7ag1617 983 Gene3D Ribonuclease Inhibitor 22 186 IPR032675 -
Cone7ag1617 983 SMART LRR_typ_2 329 353 IPR003591 -
Cone7ag1617 983 SMART LRR_typ_2 90 114 IPR003591 -
Cone7ag1617 983 SMART LRR_typ_2 162 186 IPR003591 -
Cone7ag1617 983 SMART LRR_typ_2 473 497 IPR003591 -
Cone7ag1617 983 SMART LRR_typ_2 449 472 IPR003591 -
Cone7ag1617 983 SMART LRR_typ_2 210 234 IPR003591 -
Cone7ag1617 983 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 332 912 IPR051716 -
Cone7ag1617 983 ProSitePatterns Protein kinases ATP-binding region signature. 653 675 IPR017441 GO:0005524(InterPro)
Cone7ag1617 983 Pfam Leucine rich repeat 427 486 IPR001611 GO:0005515(InterPro)
Cone7ag1617 983 ProSiteProfiles Leucine-rich repeat profile. 164 186 IPR001611 GO:0005515(InterPro)
Cone7ag1617 983 Gene3D Phosphorylase Kinase; domain 1 622 722 - -
Cone7ag1617 983 ProSiteProfiles Protein kinase domain profile. 647 917 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone7ag1617 983 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 618 722 - -
Cone7ag1617 983 Gene3D Transferase(Phosphotransferase) domain 1 723 921 - -
Cone7ag1617 983 SUPERFAMILY Protein kinase-like (PK-like) 627 913 IPR011009 -
Cone7ag1617 983 ProSitePatterns Serine/Threonine protein kinases active-site signature. 768 780 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone7ag1617 983 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 297 569 - -
Cone7ag1617 983 SUPERFAMILY RNI-like 204 540 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone7ag1617 Cone-Chr7:10987657 Cone9ag0880 Cone-Chr9:4293527 5.05E-70 dispersed
Cone14ag0874 Cone-Chr14:5625953 Cone7ag1617 Cone-Chr7:10987657 1.74E-174 transposed
Cone4ag1700 Cone-Chr4:12643837 Cone7ag1617 Cone-Chr7:10987657 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83070 PF01301 Glyco_hydro_35 4.50E-93 CL0058 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1617 K20718 - rcu:8258591 1645.56