Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1618 ATGAAATTACTTCAAAATGTGGTAAATTGCACCCATAACATCATCCCGTTGTTATCCTGTACAAAATCTCTGCCATTAAGGAAGCTTAAGAGGTCTCTGAAATTTCACAAAAAAAGTATGAGGAATAATTGGTTGTTCTTCATGGATCTTGATGGAGGGTCACCATATATCTTACCCATGGAGCCCTTCCTCTCACCCAGTCTAGGAGGTCATTTATTTTCCCAGATGAGTTCATTTATGGACAATTCTCTTCATCAATCTAGGCACCTGTTCATTCCTGGTAGTTTAGCTCTTGACGGTGCATTTAACTGCATGTCGAAATTTGCTGCTGCTTTACTTTTCTGGTTCTCTAGTGCTTCAAGTTCAAATCTGACCCAGAATATAAGTGGTAATCCACGTGATTCGAAAATCGGGTATTTTAATTATACTACACAAGTAAAGAACATTACTTCCAATCAAAACAATCTTACTGGATTTCACTTCAGTTTTCAACCGAACAACAGAGAATCCTCCATTCCTATTTTTCTTGGTAAGATATTTAGTACCAGCAAGAAGCTCCTTGGTCGTGAGGCTATCCGATTTCAATCTCATCCTGTGCTCTCATTAGCCGCTGCTTTAGTTCCACCATTTAACAACTTATCTTCTGAGGTGTTAGCCGTTCTGTTGGAGAATGGCGATGTTCAAGTGTGTGGATGCATAGATCATAGACCTTGTGAAGTTGAGCGCCGAGCTAGTGCTAGTTTATCTTACCCTGACTTGAAATGGAAGAGACAAGCTGTTGAGCCCATAACAGGCATTGAGTTTCCTATGATATTGGACAATAGCTTATACAGAGACAACAATTCCAGGTTAAGCTCAGAGGTTCTTGTTGGAACCGGATCCAGAATTATGAAAATAATTAAAATTAAGTCACTTAAGGTCTATGCTTTTGGCTTTTATGTTCATCCTAAAGAGGTATGTGAGAAGTTGGGTTCAAAATATGCTTCAATTGCAGAAGATAAACTAAACAAATGCTCTGGTTTTTACCAGGACCTTCTCAGGGAGGATATCGATATGACTGTTAGACTTGTGGTTAACTGCAATGGGATGAAAATTATTTCTGTTAGAGATGCTTTTGAGAAATCTCTTCGAGCCCGATTATTGAAGACAAACCCAGATACAGATTATCATTGTCTGGAAAAATTTGGTTCTTACTTCACAGAAGATATTCCATTGCCAAGAGGAACAACAATTAATTTTCGAAGAACATCGGATGGCCAATTAATTACTGAAATTGGAGGCAATCAGATCGGAGCCGTTCAAAGCAAGGATTTATGCAGGGCTTTCTTCGGAATGTACATAGGAGATGTTCCGGTTTCAGAGAAAACAAAAGAAGAGATCGGGCGAAATGTTGCGGTTATTATCAGAAGATGTTGA 1416 38.84 MKLLQNVVNCTHNIIPLLSCTKSLPLRKLKRSLKFHKKSMRNNWLFFMDLDGGSPYILPMEPFLSPSLGGHLFSQMSSFMDNSLHQSRHLFIPGSLALDGAFNCMSKFAAALLFWFSSASSSNLTQNISGNPRDSKIGYFNYTTQVKNITSNQNNLTGFHFSFQPNNRESSIPIFLGKIFSTSKKLLGREAIRFQSHPVLSLAAALVPPFNNLSSEVLAVLLENGDVQVCGCIDHRPCEVERRASASLSYPDLKWKRQAVEPITGIEFPMILDNSLYRDNNSRLSSEVLVGTGSRIMKIIKIKSLKVYAFGFYVHPKEVCEKLGSKYASIAEDKLNKCSGFYQDLLREDIDMTVRLVVNCNGMKIISVRDAFEKSLRARLLKTNPDTDYHCLEKFGSYFTEDIPLPRGTTINFRRTSDGQLITEIGGNQIGAVQSKDLCRAFFGMYIGDVPVSEKTKEEIGRNVAVIIRRC 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10996293 11000617 - Conep07aG0166700.1 Cone7ag1618 442214

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1618 471 Gene3D - 318 461 IPR016089 -
Cone7ag1618 471 Pfam Chalcone isomerase like 288 460 IPR016087 -
Cone7ag1618 471 PANTHER FATTY-ACID-BINDING PROTEIN 2 139 471 - GO:0005504(PANTHER)|GO:0009570(PANTHER)
Cone7ag1618 471 SUPERFAMILY Chalcone isomerase 259 469 IPR036298 GO:0016872(InterPro)
Cone7ag1618 471 Gene3D - 260 446 IPR016088 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1618 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0850 Cone-Chr4:5688518 Cone7ag1618 Cone-Chr7:10996293 6.48E-55 dispersed
Cone4ag1702 Cone-Chr4:12655851 Cone7ag1618 Cone-Chr7:10996293 2.30E-297 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g169 Blo01g01441 . . . . Bpe02g00513 . Bma01g02191 . . . . . . Sed08g1807 . . Bhi04g01521 Tan02g1576 Cmetu03g0836 . Hepe08g1439 . Lcy13g2227 . . . . . . . Cone4ag1702 Cone7ag1618 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla08g00982 Cam08g1431 Cec08g1009 Cco08g1132 Clacu08g1136 . Cre08g0920 Lsi08g00828 . Chy03g00652 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004076 2 3 1 2 2 1 1 1 1 1 1 1 0 1 1 1 1 3 1 1 1 1 1 1 1 1 1 2 8 1 44