Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1634 ATGGTGTCTGAGATGGAGAACGATAACATTGAAGACACGGAGATTGAGGTCCTTCCTTCAATGTGGCCTGAAGATATACGACCTGATGTTGGAAAGCAATTCAATGTTGAAAAGCCAGGACAGGATCAAGATATGCTTGAAGAAGTTACCATAATAGAGGAGCCAACTATCGTTGATTTCAAGCGCCTTTTAGAGCTAACCAACTATACTGAGAAGGGCTCTTCTCAATTGCAATATCTTGCGAAACAGTGGGAGTATAAACAGGCAGAAGTCGTACGCCTTCTAAAAGAAGAACTGGACATTTTATGCAAACAGAAAAGGGAAGTTGAGCTCAAGAAATTGGAGATCATAGAGGAGCATCGGTTTGAGGAAGAGTTTGCTGGTGATAATCGTCCAATTTCTGTTTGGGAAGAAGTAATTGATATTTGGCAAGCTGTTCCTAGAAGGAAAAATGATGTTGTTTTCCAGAACAAGAGAGTTGAAATAGAAGCGGAGTATGATACTGTGACTTACTGGAAGCAGCGGGCAATGCACTTTGAGAAATTGTTGGAAGCAAGTCTACAAAGAGAGCATATTCTTGAGGAGAAGCTTCAGGAAAGCATAAATAATATTGAAAAGCAATCCTTGCCGGTCGAAGAATTGTCTCAGATTCTTAAAAGAGCAGATAACTTTTTGCATTTTGTACTTCAGAATGCACCTGTTGTTATTGGCCATCAGGATAATGAGCTGAGGTATCGTTTTATATATAATCATTTTCCAAGTCTGCAAGAGGAGGACATTCTAGGAAAAACAGATGTTGAAATTTTTTCTGGAGCAGGTGTTATGGAAATTCAGGCATTCAAGAAAGAAGTATTAGAAAAAGGAAAACCTGCAAAACGGGAAATTGAATTTGAGACTGAATTATTTGGGTTAAAGACGTTTTTGATCTATGTGGAACCTGTCTTCAGCAAGTCAGGGGAGACAATTGGGATAAACTATATGGGAATGGATGTAACCGATCAGTTAAGGAAAAGAGAAAAGATGGCCAAGATTCGTGAAGAGATAGCAGTTCAGAAAGCCAAGGAAACTGAACTAAACAAAACAATTCATATTACAGAGGAGACAATGAGAGCCAAACAGATGCTAGCAACTATGTCTCATGAGATAAGGTCTCCTCTCTCTGGAGTTGTAAGCATGGCTGAGATTCTTGGCACCACAAAACTTGATCGGGAGCAGCGACAGCTGTTGGATGTCATGCTTTCTTCAGGAGATTTGGTGCTTCAACTTATAAATGACATCCTTGACCTATCCAAGGTTGAGTCAGGAGTCATGAAGTTGGAAGCTACAAAATTTCGACCAAGAGAGGTTTTAAAGCATGTACTCCAGACGGCTGCTGCATCATTGAAGAAATCTTTAAGATTAGAAGGATGTGTAGCAGATGATGTTCCCATAGAGGTCATTGGGGACGTTCTAAGGATTAGGCAAATTCTCACCAACTTGATCAGCAACGCAATCAAGTTTACCCATCAAGGAAAGGTTGGGATTAAACTTTATGTGATACCAGAGCCACCTTGTGAGGAAGAGGAGGGATGCCATCAAAAGTTAAATTCTGATCAATCAGCAATATCAGCAACTGGCATGAAAGAAGAGAATTGTCTACCAACACCTCTAACAAACCATGAACAAAAAGTTTTTCCTAGTCATACGAATGGGGAGAGTCCTAACAATGTTCATTTACCTTCTCTTGAACCTAGAACCCCAAGAAAGAGTGACGTTTTAATGAATGGAAATAGGGAGGAGCAACATTATTCACTGGAAACAACTGTGTGGATACGCTGTGATGTACATGACACAGGAATCGGAATTCCTGAAAGTGCATTGCCTACACTTTTTAGAAGATACATGCAAGTTAGCGCTGATCATGCCCGGAAATATGGAGGGACAGGATTAGGACTGGCAATATGCAAACAACTGGTAGAGCTGATGGGTGGTCATCTCACAGTGTCCAGTCAAGAAAAATGCGGGTCTACATTTACATTTGTTTTACCTTACAAGGTTTCAACTGCTTGTGATGCTTCCTCTGATGATTCTGGTGAGTTCTTAGACGTGGTGGAGCATGATACTACAAACGATGACACAACTGAGGGCTTTTTCCAGTTCCATCCCCATAGTTTTGGTTCGCTGTCATCATCTAATGGATCGAGCAGTACACAAAAGTTACTGTCGCCTGACATAAAGGATAGTGGATCAAGAAATCTGAAAGGATCATCTAAGACTTCTAATTTGTTTCCCTCAAGCAATGCCAGATCAAAAGAGACAACTTCTGTTGAAAATGTCTGTTCAGCTGTTGATGTTGCAGAGATGTTCTCAGAACCAGATAGTTCACAAACTCACAACTCAAATTCCGACAGTCAGAAGTCGTCGTGTCGAAGAAATGGATGCGAAAATTACACAAACGGCCATTCGCAAAATGGTGGTATTGATCCCTCTCCTATCATGGAGACAACAAAAGTTGAGGCTATAATGGCAAAGACAAGTACACCTCGAGGAGAAACAGTTAAGGGACAGGTGAAATCTGCATGTTCAGAATTAATCAACTCAGTATTGTTACCTAACATTCTACTCGTGGAGGATAACAAGACGAACATAATGGTCACACAGTCGATGATGAAGAAGTTAGGCCATAAAATAGATGTCACTACCAATGGAGTTGAAGCTGTCCGTGCAGTTCAAGGCCGTAGTTATGATCTCATCCTCATGGATGTAAGTATGCCACTGATGGATGGCCTACAGGCTACGAGGTTAATTCGTTCTTTTGAGGAAACGGGCAATTGGGAAGCTGCGACAATGGCTGGAATTGAGCAAAGTCAAAGTTGTCTGTCTTCCCTGCCTTCTTCATCTAGCAAGAGGACCCCCATTGTTGCTATGACGGCAAATGCATTGGCAGAGAGTGCAGAAGAGTGCTTTGCAAACGGTATGGATTCGTTCGTGTCAAAGCCTGTAACTTTTCAAAAATTGAAGCAGTGCCTAGAACAATATTTACCGTGA 3027 41.2 MVSEMENDNIEDTEIEVLPSMWPEDIRPDVGKQFNVEKPGQDQDMLEEVTIIEEPTIVDFKRLLELTNYTEKGSSQLQYLAKQWEYKQAEVVRLLKEELDILCKQKREVELKKLEIIEEHRFEEEFAGDNRPISVWEEVIDIWQAVPRRKNDVVFQNKRVEIEAEYDTVTYWKQRAMHFEKLLEASLQREHILEEKLQESINNIEKQSLPVEELSQILKRADNFLHFVLQNAPVVIGHQDNELRYRFIYNHFPSLQEEDILGKTDVEIFSGAGVMEIQAFKKEVLEKGKPAKREIEFETELFGLKTFLIYVEPVFSKSGETIGINYMGMDVTDQLRKREKMAKIREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILGTTKLDREQRQLLDVMLSSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVLKHVLQTAAASLKKSLRLEGCVADDVPIEVIGDVLRIRQILTNLISNAIKFTHQGKVGIKLYVIPEPPCEEEEGCHQKLNSDQSAISATGMKEENCLPTPLTNHEQKVFPSHTNGESPNNVHLPSLEPRTPRKSDVLMNGNREEQHYSLETTVWIRCDVHDTGIGIPESALPTLFRRYMQVSADHARKYGGTGLGLAICKQLVELMGGHLTVSSQEKCGSTFTFVLPYKVSTACDASSDDSGEFLDVVEHDTTNDDTTEGFFQFHPHSFGSLSSSNGSSSTQKLLSPDIKDSGSRNLKGSSKTSNLFPSSNARSKETTSVENVCSAVDVAEMFSEPDSSQTHNSNSDSQKSSCRRNGCENYTNGHSQNGGIDPSPIMETTKVEAIMAKTSTPRGETVKGQVKSACSELINSVLLPNILLVEDNKTNIMVTQSMMKKLGHKIDVTTNGVEAVRAVQGRSYDLILMDVSMPLMDGLQATRLIRSFEETGNWEAATMAGIEQSQSCLSSLPSSSSKRTPIVAMTANALAESAEECFANGMDSFVSKPVTFQKLKQCLEQYLP 1008
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11050862 11055104 + Conep07aG0168300.1 Cone7ag1634 442230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1634 1008 FunFam Putative histidine kinase 5 358 435 - -
Cone7ag1634 1008 PRINTS Bacterial sensor protein C-terminal signature 639 657 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cone7ag1634 1008 PRINTS Bacterial sensor protein C-terminal signature 604 618 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cone7ag1634 1008 PRINTS Bacterial sensor protein C-terminal signature 663 676 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cone7ag1634 1008 Pfam Response regulator receiver domain 866 935 IPR001789 GO:0000160(InterPro)
Cone7ag1634 1008 CDD HATPase_EvgS-ArcB-TorS-like 486 676 - -
Cone7ag1634 1008 FunFam Histidine kinase 5 858 1008 - -
Cone7ag1634 1008 MobiDBLite consensus disorder prediction 559 573 - -
Cone7ag1634 1008 Gene3D PAS domain 211 347 - -
Cone7ag1634 1008 SMART REC_2 864 1003 IPR001789 GO:0000160(InterPro)
Cone7ag1634 1008 Coils Coil 92 112 - -
Cone7ag1634 1008 Gene3D - 357 435 - -
Cone7ag1634 1008 ProSiteProfiles Response regulatory domain profile. 865 1007 IPR001789 GO:0000160(InterPro)
Cone7ag1634 1008 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 17 1007 - GO:0000155(PANTHER)|GO:0005887(PANTHER)|GO:0009927(PANTHER)|GO:0046777(PANTHER)
Cone7ag1634 1008 Gene3D - 436 683 IPR036890 -
Cone7ag1634 1008 MobiDBLite consensus disorder prediction 783 823 - -
Cone7ag1634 1008 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 601 677 IPR003594 -
Cone7ag1634 1008 CDD HisKA 369 431 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cone7ag1634 1008 MobiDBLite consensus disorder prediction 720 769 - -
Cone7ag1634 1008 CDD REC_hyHK_CKI1_RcsC-like 866 1003 - -
Cone7ag1634 1008 MobiDBLite consensus disorder prediction 559 581 - -
Cone7ag1634 1008 FunFam Histidine kinase 5 212 347 - -
Cone7ag1634 1008 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 369 435 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Cone7ag1634 1008 SUPERFAMILY CheY-like 865 1007 IPR011006 -
Cone7ag1634 1008 Coils Coil 187 207 - -
Cone7ag1634 1008 MobiDBLite consensus disorder prediction 783 824 - -
Cone7ag1634 1008 Gene3D - 863 1007 - -
Cone7ag1634 1008 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 424 678 IPR036890 -
Cone7ag1634 1008 ProSiteProfiles Histidine kinase domain profile. 377 679 IPR005467 -
Cone7ag1634 1008 SMART HKATPase_4 481 679 IPR003594 -
Cone7ag1634 1008 SMART HisKA_10 370 435 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cone7ag1634 1008 Pfam His Kinase A (phospho-acceptor) domain 372 435 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0760 Cone-Chr20:5339502 Cone7ag1634 Cone-Chr7:11050862 5.74E-13 dispersed
Cone7ag1634 Cone-Chr7:11050862 Cone9ag0376 Cone-Chr9:1690632 2.29E-53 dispersed
Cone4ag1716 Cone-Chr4:12713507 Cone7ag1634 Cone-Chr7:11050862 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46580 PF00481 PP2C 5.00E-65 CL0238 Cone TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1634 - - - 0.0