Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1635 ATGAAAACGAGGCGAGAGAAATGGACCCAGATTTTGTTTCTGGTCACACTTGTGTGGCTAACCGTAACGACGAGGATCTTACCGGCAGCAACTGCAGAGAACACGACAATCTGGCCAGTGAATGTGGGCGTGGGAGTTGTTCTTGATAATGACTCGTGGGTTGGGAAGATGGGATTGAGTTGCATTGAAATGGCGATTTCGGATTTCTATGCTTCTCATGGTTCTTACAACACTCGGCTCGTCCCTCACATTAGGGACTCTTACAAAGATGCTGTCGGAGCAGCTGCTGCAGCTTTAGACCTCATGAAGAATGTGCAAGTGCAAGCAATAATAGGCCCACAACAATCGATGCAAGCAAACTTTGTTATCTATCTCGGCCAAAAAGCTCAAGTCCCCATCATATCATTTTCCGCAACAAGTCCCTCTCTTACATCTCTTAGAAGCCCTTATTTTATCCGCATAGCACAAAACGACTCATATCAAGTACAAGCCATAAGCGCCATCATTCAGGCATTCGGGTGGAGAGAAGCTGTTCCCATCTATGTAGACAACGAATTCGGGGAGGGAATTATCCCCTACTTGACAGAAGCATTACAAGATGTAGACACGCGGATCCCGTACCATAGTCTCATCCCTTCATCAGCTTCTGATGATGAAATTGGTTTAGAGCTTTACAAATTGATGACAATGGAAGCAAGAGTCTTTGTTGTTCACATGGATACCAATCTTGGTTCTAAGCTTTTTCTCAAGGCTAAAGAGATTGGAATGATGGAAGATGGCTATGTTTGGATCGTGACTGATTCGATCATGAATTGCTTGAGTGTTATAGATCATTCCATCATCGAGGTAATGCAAGGTGTATTGGGTGTAAAGACTTACGTTCCAGGAACAGTGAAGCTTGATAATTTTACGGTTAGATGGAAAAGGAAATTGATACAAGACAATGTTACTATTGGCAACCATGAACTAGAGGTATTCGGTCTTTGGGCTTATGATGCTACTTGGGCACTAGCCATGGCTATTGAGAAGGCAGGGACTGAAAATTTAGTTTATCAGAATTCAAACGGTTCAAACAGATTAACAGATTTAGAAGCTTTTGGGGTCAATCAAAATGGCGAAAAACTTCGCCATGCATTAATCGATACTCAGTTTTCAGGCATGGCTGGAGAGTTTAACCTCATTAACGAGCAACTAGAGTCAACTACATTTGAGATAGTGAATGTGAATGGAAATGGAGGAAGAACTGTAGGATTTTGGACGTCAGAAAATGGGTTGACGAATGTGACAGGAATTAGCTCAAGTTCTACTTCTAAGGGCAGCTTAGGGACTATTGTGTGGCCAGGAGACACAACATTAGTTCCCAAGGGATGGGAGATCCCAACAAATGGGAAGAAGTTGAAAATTGGTGTTCCGGTCAAAAATGGTTTTGCCAAATTTGTTACGGTTACAAAATATCCCGAGACAAACACAAGCCTAGTCACTGGATACTGCATAGACGTTTTCAAAGCCGTCTTGGAAGAATTGCCTTATGATGTTAGTTATGAATTCAGTCCCTTTGAAGATGAGGAAGGGAATCTGGCCGGTACTTATGATGATTTGGTCTACAATGTGCATCTCAAGAATTATGATGCAGTGATTGGAGATATAACAATTATAGCAAATAGATCTTTGTATGTAGACTTCACTTTGCCATATACAGAATCAGGTGTGTCTATGGTGGTGCTAGGTAAGGATGATTCGAGGAAGAATGCATGGGTGTTCTTGAAGCCTTTGACTTGGGATCTATGGGTCACAACCGTTTGTTTCTTTATTTATATCGGATTCGTCGTTTGGCTACTTGAACATAGAATAAACGACGATTTCCGTGGGCCCCTTGAGCATCAAATCGGAACAAGTTTGTGGTTCTCCTTCTCCACCATGGTGTTTGCACATAGGGAGGTAGTTTTTAACAATTTGGCGAGGTTTGTGGTGATAGTATGGTGCTTTGTGGTGCTTATCCTCACGCAAAGTTACACGGCTAGTTTGACCTCGCTGTTGACTGTTGAACAGCTCCAACCGTCAGTCAGTGATATTAACGAGCTTCTAATTAGACGGCTGAATGTGGGGTATCTAGAAGGCTCTTTCGTTTATGGGATCTTAAAGTCTTTAAAGTTTGAAGATTCTAACCTTATTCCTTATGCTTCTCCACAACAAATGGATGACCTTTTCTCGAAAGGAAGTGAACATGGTGGTATTTCTGCTGCTTTGGACGAGATTCCTTACATTAGGCTTTTACTTTCACAATATACTTCCAAATATATCATGGGTGATCCTAGATACAAAACTGGTGGATTTGGATTTGTTTTCCCAACAGGGTCCCCCCTTGTGGGTGACATCTCTAGAGCAATCTTAAAAGTGACGGAAGGAGATAAGATGACCGACATCGAGAGGATTTGGTTTGGGGACCAATCCAGATATCTGCCCTCTAACTCAGAGTTGAGAGCTTTTGGTCTTGAGAGCTTTTGGGGTCTATTTCTTATTACAGGAGTGACTTCAGTATTTGCTGTGATCATAGCCGGGGCTATGTTCCTTCGCAAGGAATGGCAATCCCTAAAAAACAATGATTCGGAAGCTTCCATTTGGAAAAGAATTTGTGCCGTGGCAAGACATTATGACAAGAAGGATCTTACTAGCCATGCTTTCAGAAAGAGTACCACTTATCTTGAGGACAAAAGTGGGCAAGGAATAGCTATGGGTAGGGTTCATGGCGGGGCTGTGGTCCCCATTGAGACCTCTCCGAGCGATGAATGCCCTTCTAGTCCATTGGATCATTCCATCGAAACAGTTCCCAGCTTTGAGATTGTTAGATAG 2850 42.63 MKTRREKWTQILFLVTLVWLTVTTRILPAATAENTTIWPVNVGVGVVLDNDSWVGKMGLSCIEMAISDFYASHGSYNTRLVPHIRDSYKDAVGAAAAALDLMKNVQVQAIIGPQQSMQANFVIYLGQKAQVPIISFSATSPSLTSLRSPYFIRIAQNDSYQVQAISAIIQAFGWREAVPIYVDNEFGEGIIPYLTEALQDVDTRIPYHSLIPSSASDDEIGLELYKLMTMEARVFVVHMDTNLGSKLFLKAKEIGMMEDGYVWIVTDSIMNCLSVIDHSIIEVMQGVLGVKTYVPGTVKLDNFTVRWKRKLIQDNVTIGNHELEVFGLWAYDATWALAMAIEKAGTENLVYQNSNGSNRLTDLEAFGVNQNGEKLRHALIDTQFSGMAGEFNLINEQLESTTFEIVNVNGNGGRTVGFWTSENGLTNVTGISSSSTSKGSLGTIVWPGDTTLVPKGWEIPTNGKKLKIGVPVKNGFAKFVTVTKYPETNTSLVTGYCIDVFKAVLEELPYDVSYEFSPFEDEEGNLAGTYDDLVYNVHLKNYDAVIGDITIIANRSLYVDFTLPYTESGVSMVVLGKDDSRKNAWVFLKPLTWDLWVTTVCFFIYIGFVVWLLEHRINDDFRGPLEHQIGTSLWFSFSTMVFAHREVVFNNLARFVVIVWCFVVLILTQSYTASLTSLLTVEQLQPSVSDINELLIRRLNVGYLEGSFVYGILKSLKFEDSNLIPYASPQQMDDLFSKGSEHGGISAALDEIPYIRLLLSQYTSKYIMGDPRYKTGGFGFVFPTGSPLVGDISRAILKVTEGDKMTDIERIWFGDQSRYLPSNSELRAFGLESFWGLFLITGVTSVFAVIIAGAMFLRKEWQSLKNNDSEASIWKRICAVARHYDKKDLTSHAFRKSTTYLEDKSGQGIAMGRVHGGAVVPIETSPSDECPSSPLDHSIETVPSFEIVR 949
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11055723 11059629 - Conep07aG0168400.1 Cone7ag1635 442231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1635 949 PIRSF IGluLR_plant 9 909 IPR017103 -
Cone7ag1635 949 FunFam Glutamate receptor 584 714 - -
Cone7ag1635 949 FunFam Glutamate receptor 465 584 - -
Cone7ag1635 949 Gene3D - 585 718 - -
Cone7ag1635 949 CDD GluR_Plant 464 813 - -
Cone7ag1635 949 SMART GluR_14 467 815 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cone7ag1635 949 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 43 875 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Cone7ag1635 949 SUPERFAMILY Periplasmic binding protein-like I 43 448 IPR028082 -
Cone7ag1635 949 Gene3D - 159 321 - -
Cone7ag1635 949 FunFam Glutamate receptor 163 320 - -
Cone7ag1635 949 Pfam Ligand-gated ion channel 592 843 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cone7ag1635 949 CDD PBP1_GABAb_receptor_plant 44 428 IPR044440 -
Cone7ag1635 949 Gene3D - 369 464 - -
Cone7ag1635 949 Pfam Ligated ion channel L-glutamate- and glycine-binding site 487 574 IPR019594 GO:0015276(InterPro)|GO:0016020(InterPro)
Cone7ag1635 949 SUPERFAMILY Periplasmic binding protein-like II 441 815 - -
Cone7ag1635 949 FunFam Glutamate receptor 368 464 - -
Cone7ag1635 949 Gene3D - 465 584 - -
Cone7ag1635 949 Gene3D - 760 819 - -
Cone7ag1635 949 Pfam Receptor family ligand binding region 61 411 IPR001828 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag2030 Cone-Chr4:14092024 Cone7ag1635 Cone-Chr7:11055723 1.72E-122 dispersed
Cone7ag1635 Cone-Chr7:11055723 Cone7ag1638 Cone-Chr7:11071332 0 dispersed
Cone7ag1635 Cone-Chr7:11055723 Cone7ag1636 Cone-Chr7:11060078 0 tandem
Cone10ag1006 Cone-Chr10:6929086 Cone7ag1635 Cone-Chr7:11055723 1.05E-128 transposed
Cone7ag1205 Cone-Chr7:8956852 Cone7ag1635 Cone-Chr7:11055723 3.03E-255 transposed
Cone17ag0960 Cone-Chr17:7475325 Cone7ag1635 Cone-Chr7:11055723 0 wgd
Cone20ag0303 Cone-Chr20:1349219 Cone7ag1635 Cone-Chr7:11055723 0 wgd
Cone4ag1717 Cone-Chr4:12718045 Cone7ag1635 Cone-Chr7:11055723 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1635 K05387 - mdm:103449079 1055.05