Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1636 ATGTTTCACAAGAACCGAAGCCAGCTTGTTTCTTTCTTGTCCATCTTTCTTTGCCTAATGGGTACAGGCAGAGCATTGGAAGAGGAGGAGAAGAGGACGACTATCCCCGTCAATGTGGGATTAATCGTCGATTTGGATACATGGATTGGGAGGATGGGCTGGAGCTGCATAGAGATGGCTATCTCTGATTTCTATGCATCTCATTCTCATTACAAGACTAGGCTCATCCTTCATACTAGAAACTCCAACAGCGATGTCCTTGGAGCCGCTGCGGCAGCTCTGGACCTTATAAGGAACATCCAGGTGCAAGCAATCATAGGGCCACAAAATTCAATGCAAGCAAGCTTCCTTATCAGTCTTGGAGAGAAAGCTCACGTTCCCATTGTATCATTCTCTGCAACAAACCCGTACCTCACATCTCTTCGGAGTTCGTACTTCTTTCGAGCAGCACAAAATGACTCGTCTCAAGTAAAAGCCGTGAGCAAACTTGTTCAAGTTTTCGGGTGGAGAGAGGTTGTGCCCATCTATGCAGACAATGAATTTGGAGAAGGAATTATACCGTACTTGGTGTATGCATTGGAGGGGGTAGGTGCTCATATCTCTCCCCACCGTATTGTCATTCCCCCATTGGCTTCAAATGATCAACTTCATGAAAAGCTTTACGAGTTGATGACAATACCAACTAAAATATATATAGTTCACCTGAATCCTGATCTTGCTGTTAAGCTGTTTACGAAGGCTAAAGAGGTTGGATTGATGAGTGAAGGCTATGCTTGGATCGTGACGGATGCAGTAGCCGAGTTCTTTGGTTCCTTTAATGATTCAACTCTCGATGCAATGCAAGGAGTATTGGGTGTAAAGACATACACTCCAAAAACAGAAGCGGCAAATAAGTTAGCAACCCATTGGAGAAGGTTCACATATCCGAATAAAAATAACAGTACTGAAAGTGCAAAACCTCAACTCAATATATTTGGTCTGTGGGCTTATGATGCTGCTTGGGCACTAGCCACGGCTGCTGAGAAGGCAGGGACCACAAACTTAAGATACAAAAATGTAAATGCCTCGTCTTCCACTAATTTAACAGAACTAGAAATCTTTGGGGTCAATGAAAATGGTGAAAGACTCTGTGATGCTCTGGTGAATACGAGATTCAAAGGGCTTGCCGGAGAGTTTGCTCTTGTAAACGGGCAGTTGGAATCATCAAAGTTTCAGATATTCAACGTGATAGGTACTGGAAAGAAAAGTATAGGATTTTGGACGCCAGGAGGTCAATTGAAAGCCTTGAACAACAAAACAAGCACTAGTAGTTATTCTACCTCTAGAGCCGGTTTAGGGACAATAATATGGCCGGGAGACACCATTGAAGTTCCTAGGGGATGGCAGATTCCAACAAATGGGAAAACCTTGCGAATTGGAATTCCAGTGAATACGTATTATAAGGAATTTGTTTCATTCGAGCATGACAACAAAACTAACAGTACAACGGCGAGTGGATACTGCATAGATGTCTTCATGGAAGTCGTGAAAACACTACCATATACGTTAAGCCTTGAATTCCTTCCATTTGCGACACGAAATGGGCAAATAAGTGGTAGTTATGATGATTTGATATATCAAGTTTATAGCGGGACGTATGATGCAGCGGTAGGCGACATCACGATAACGTCGAATCGATCCTTGTACATAGATTTCACTCTCCCTTTTACAGAAACAGGCGTGTCAATGGTGGTGCCTATAAGAGCAAGGGGTGTCTCCAAAAATAAAGCATGGGTGTTCTTGAAGCCCTTGACTTGGGACCTGTGGCTGACAAGCGGCTGTTTCTTTGTCTTCATTGGGCTTGTGGTTTGGTTTCTTGAACATCGTGTGAATGACGATTTTCGACGGGGACCTCATCTACACCAGTTGGCAACAAGTCAATGGTTTTCTTTCTCAACTATGGTTTTTGCTCAAAGGGAGGTACTAGCTACGAACTTGGCTAGAAGTGTGGTGGTGGTGTGGTGCTTTGTTGTGCTTATCTTGACCCAAAGTTACACAGCGAGTCTGGCATCCCTCTTGACAGTAGAGCAACTCCAGCCCATTGTTTCTGATTGGCATCAGCTTCTAAGGAACAATGACCGAGTGGGATACATAAAGGGTTCTTCCGTTTACGGAATCTTGAAATCATTAAACTTCGACGACTCGAATCTCGTAAGCTATACCTCTATCGAGGAGCTGCATCAACTCTTCACAAAAGGAAGTTCTAATGGCGGTGTTGCTGCTGCTCTCGATGAAACTCCTTACATGAAGCTTTTCCTTTCCAAGTTTTCATGTTCTGAGTATGTCATACAAAACCAATTAACCTTTAAAAGCAAAGGATTCGGATTTGTTTTCCCGATTGGCTCGCCGCTTGTATCCGATATATCCAGGGGAATCTTAACCGTGATTGATGGAGGAAAGATGGACCGAATCAATGAGAAAAGGTATGGGCCACAGTTGAATTGTTCGATGCCCACTGATACCAAGTTTTCTACCAGCCTGGGCCTGGATAGCTTTCTGGGCCTCTTCCTGATAGCTGGGGCTACAGCAGTATTAGCTCTTATCATGTTCGTCGTTATCTTCGCCCACAAGGAACACGACAATCTGAAGAAGGACGTTCTGTCGAAGAACCAAATCATGCAAAGAATCGGTGCGTTGTTTGAATTATATGACAAAAGGGACACCAAGCTCCACATTGGGCCGAAATCAAGCGAGCCCAAGGATGGGGAAAATGACAATTGTAATGGGCCTGACCATTTTGTTGGTACACGTGTAGTAGCTCCGGTCTTGGACTCTCCATGGTCCAATGGCAGGCCCAGTTCGTCTAAAAATTCGACCGAGATCGACGATCATGCTACACCCGCTTGTTTGCCTAAATCCGGAGTCCATATACACCGACAGTTAGAAATTGAGTTTGACAGTATTGTTTAA 2949 44.08 MFHKNRSQLVSFLSIFLCLMGTGRALEEEEKRTTIPVNVGLIVDLDTWIGRMGWSCIEMAISDFYASHSHYKTRLILHTRNSNSDVLGAAAAALDLIRNIQVQAIIGPQNSMQASFLISLGEKAHVPIVSFSATNPYLTSLRSSYFFRAAQNDSSQVKAVSKLVQVFGWREVVPIYADNEFGEGIIPYLVYALEGVGAHISPHRIVIPPLASNDQLHEKLYELMTIPTKIYIVHLNPDLAVKLFTKAKEVGLMSEGYAWIVTDAVAEFFGSFNDSTLDAMQGVLGVKTYTPKTEAANKLATHWRRFTYPNKNNSTESAKPQLNIFGLWAYDAAWALATAAEKAGTTNLRYKNVNASSSTNLTELEIFGVNENGERLCDALVNTRFKGLAGEFALVNGQLESSKFQIFNVIGTGKKSIGFWTPGGQLKALNNKTSTSSYSTSRAGLGTIIWPGDTIEVPRGWQIPTNGKTLRIGIPVNTYYKEFVSFEHDNKTNSTTASGYCIDVFMEVVKTLPYTLSLEFLPFATRNGQISGSYDDLIYQVYSGTYDAAVGDITITSNRSLYIDFTLPFTETGVSMVVPIRARGVSKNKAWVFLKPLTWDLWLTSGCFFVFIGLVVWFLEHRVNDDFRRGPHLHQLATSQWFSFSTMVFAQREVLATNLARSVVVVWCFVVLILTQSYTASLASLLTVEQLQPIVSDWHQLLRNNDRVGYIKGSSVYGILKSLNFDDSNLVSYTSIEELHQLFTKGSSNGGVAAALDETPYMKLFLSKFSCSEYVIQNQLTFKSKGFGFVFPIGSPLVSDISRGILTVIDGGKMDRINEKRYGPQLNCSMPTDTKFSTSLGLDSFLGLFLIAGATAVLALIMFVVIFAHKEHDNLKKDVLSKNQIMQRIGALFELYDKRDTKLHIGPKSSEPKDGENDNCNGPDHFVGTRVVAPVLDSPWSNGRPSSSKNSTEIDDHATPACLPKSGVHIHRQLEIEFDSIV 982
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11060078 11063629 - Conep07aG0168500.1 Cone7ag1636 442232

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1636 982 SUPERFAMILY Periplasmic binding protein-like I 37 461 IPR028082 -
Cone7ag1636 982 FunFam Glutamate receptor 469 589 - -
Cone7ag1636 982 Pfam Ligand-gated ion channel 598 854 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cone7ag1636 982 Gene3D - 323 468 - -
Cone7ag1636 982 MobiDBLite consensus disorder prediction 904 923 - -
Cone7ag1636 982 FunFam Glutamate receptor 369 468 - -
Cone7ag1636 982 Pfam Ligated ion channel L-glutamate- and glycine-binding site 483 578 IPR019594 GO:0015276(InterPro)|GO:0016020(InterPro)
Cone7ag1636 982 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 37 894 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Cone7ag1636 982 MobiDBLite consensus disorder prediction 904 920 - -
Cone7ag1636 982 FunFam Glutamate receptor 590 721 - -
Cone7ag1636 982 FunFam Glutamate receptor 156 317 - -
Cone7ag1636 982 Gene3D - 154 320 - -
Cone7ag1636 982 SMART GluR_14 471 824 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cone7ag1636 982 MobiDBLite consensus disorder prediction 937 960 - -
Cone7ag1636 982 MobiDBLite consensus disorder prediction 940 955 - -
Cone7ag1636 982 Gene3D - 590 719 - -
Cone7ag1636 982 CDD GluR_Plant 468 820 - -
Cone7ag1636 982 Gene3D - 469 589 - -
Cone7ag1636 982 Pfam Receptor family ligand binding region 57 411 IPR001828 -
Cone7ag1636 982 CDD PBP1_GABAb_receptor_plant 38 428 IPR044440 -
Cone7ag1636 982 PIRSF IGluLR_plant 4 924 IPR017103 -
Cone7ag1636 982 SUPERFAMILY Periplasmic binding protein-like II 444 820 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1636 K05387 - - mdm:139187527 932.554
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone7ag1636 Cone-Chr7:11060078 Cone7ag1639 Cone-Chr7:11075409 0 dispersed
Cone7ag1635 Cone-Chr7:11055723 Cone7ag1636 Cone-Chr7:11060078 0 tandem
Cone7ag1636 Cone-Chr7:11060078 Cone7ag1637 Cone-Chr7:11066815 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g633 . . . . . . . . . Cmo12g00333 . . . . Sed11g1121 . . Bhi04g00082 Tan02g2793 Cmetu03g1615 . Hepe10g0196 . Lcy13g1870 . . . . . . . . Cone7ag1636 . . . . . Cme03g01550 . . Bda01g01358 Bda13g01838 . . . Bma02g00574 . . . . Cma12g00381 . . . . . . . . . . . . . . . . . . Lsi08g01270 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000144 7 5 8 3 3 6 2 4 6 9 4 4 7 6 7 9 4 15 6 5 12 6 5 10 9 7 3 6 6 18 202