Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1637 ATGATTGATGTGAATCGTAATCCAATTGCTGTCACCATCTATACTTTTAGTAATCATGGTATGATTGATGTGGACCTTTTACATTTTTGCCTTCAGAAAAGCAACCTTCCTAAAGCTATTTTCCAAGAGCTCAAAATGAAGGAATTAATGGGTTTGCAGGTCATATTTTTCATGTCCATCTTTCTTCATCTGAATCGTATATCAACGGCGACAGTTCAGAACACGACATCAAACCCAGTCCCAGTGAAAGTGGGAGTGGTTTTAGATTTGGACACGTGGACTGGGACGATGGGTTCGAGCTGTATTGAGATGGCTCTCTCTGATTTTTATGCCTCTCATTCTCATTACAAGACCAGGATCAACCTCTACATCAGGGACTCCAAGAACGATGTCATCGGAGCAGCTGCCGCAGCTTTGGACCTCATTAAAAATGTCCAAGTTCAAGCCATACTAGGCCCACAAAGTTCCATGCAAGCGGACTTTGTTATCAATCTGGGCTCAAAAGCCCAAGTTCCTATCATTTCGTTTTCCGCAACAAGCCCGTTCCTTACATCCCTCCGAAGCCCATACTTTTTCCGAGCAGCCCAAAATGACTCATCTCAAGTCAAAGCCATAAGCGCAATAGTCAAAGAGTTCGGTTGGAGACAGGTTGTGCCCATCTATGTAGACAACGAATTTGGGGAGGGAATTATCCCCTACTTGACAGATGCACTGCAAGAGGCAAACTCCCGGGTCCCATATCGCAGTATCATCCCTCCATCAGCTTCTGATGATCAAATCGGCCAAGAGCTTTACAAGCTCATGACAATGCAAACTCGAGTCTTTGTCCTTCACATGTTACCCAGTCTGGCGTCTAAGCTTCTCATTAAGGCTAAAGAGATTGGAATGATGGAGAAAGGATTTGCTTGGATTGTGACTAACTCCATTTCTGAGAACTTGGGTTCTTTAGATGATTCCATTATTGATGCCATGGAAGGGGTTTTGGGTGTCAAGACACATGTCCGAGAAAGAGCAGCGGTCGACAAGTTAGGACTCAAGTTGAGAAGGAAATACAATCAAAACGATACGTCGTTTGCTAGCGCTGAACTTAATATATTCGGCTTATGGGCTTATGACGCTGCTTGGGCCCTGGCTTCGGCCTTTGGGAGGGTCGGACCTTCAAACTTTGGTTATTCTTCAAACTCCAGTTTCTCAACTAACTTAACGGACCTAGAATCTTTTGGTGTTGGTCAAAACGTTCAAGGCCTTCTAGATGCTCTGTTGAGTACTAGATTCAAAGGACTAGTCGGAGAGTTTGTTCTTAAGAATAGGCAGTTGGAATCAACGGATTTTCAGATATTGAACGTGGTTGGTAAAGGAGAAAGAGGTGTCGGATTTTGGACACAAGAAGGAGGATTATCAAAAGTCTTTTATACAAAAGGCATAAGTGTTAATAGTACTACCTCGAATGCGAGTTTAAGAACAATAATATGGCCGGGAGATACCAACGAGGTTCCGAAAGGTTGGGAGAATATTCTATTCAACAATAAAAAGTTGAGGATCGGAGTTCCGGCACTCTCAGATGGTTTTATCGAATTCGTTTCGATCAATTACGATAACAATACCAACAAAACAACCGTGGCTGGTGGTTATAGCATTGACGTCTTTGATGCAGTTGTTCAAGCATTACCATATGCTGTTAATTATGAGTACATCCCCTTTGCAAAGCCAAATGGGGAGATGGCCGGTACTTATAATGATTTGGCCTATCAAGTCTTCCTTGGGAATTATGATGCTGTGGTCGGTGACGTGACGATCATATCAAACAGATCTTTGTACGTGGATTTCACTTTGCCATACACAGAATCGGGCGTATCTATGATCGTTCCGATAACAAAAGACGCATCAAAAGGATTGGTGTTTCTGAAGCCCCTAACTACTGGCCTTTGGTTAACTAGTGGCGCCTTCTTTGTGTTTATCGGTCTCGTGGTCTGGTTTCTCGAGCATCGAATAAATGACGATTTCCGTGTTGCGCCTCTATGGTATCAAATTACAACTGGTCTCGGGTTCTCCTTCTCAACTATGACTTTCGCTCAAAAAGAGCAAGTGACTGGCAACTTAGCAAGGATTGTAGTGATAGTATGGTGTTTCGTTGTTCTCATCCTCACCCAGAGTTACACAGCTAGTCTGGCATCCCTATTGACAATTCAGAAATTCAAACCAGCCATTACTGACGTGAAGCAGCTTATAGAGAATGGTGACAGAGTGGGATATCAAAAGGCTTCTTTCGTTTACAACATATTGAAAGATTACTGGAAGTTTGACCCCTCTAATCTTGTACCTTATACATCACGTGACCAATTGCTCGAGCTTCTAACAAATGGAAGTGCAAAAGGTGGTATCTCGGCCGCCATTGACGAAATCCCTTACCTCCAAGTTTTCCTTTCGAAACATTGCTCTCAATATACGATACACGGTCCGATCTACAGAACCGCTGGATTTGGATTTGTGTTTCCAATAGGCTCTTCATTGCTAGGTGATGTGTCGAGAGCAATCTTAAACGTGACAGAGGGTGAAATAATGGAACAAATAAATAAAAAATGGATTGAGGAAGAGTCTAACTGTGCATCATCCTTCCCTACTTCTGGTGCTCTTGGTCTTGATATCTTTTTGGACCTGTTCTTGATTTCGGGGGGAACTGCAGTGGTAGCTGTGATCGTATTTGTTGTTATATTTGGTTTCAAGGAGAAAACCAGATTGAAGGAGAACGTTCTTTCCAAACCTCAGTTGGGAGAGAAGTTGAAGGAGCTATTAAAATTGTATCATGAACCTGACAGCACTTTCCATACTGATCGTGCACAAGGGGGCGAATTGAGTGTCGATGTGGGGCACATGTCACATGTCGAGGTGCAGACTGGTTCTTTGGACATTTCGATACCGGAGAGTGGGGCAGAGAGTGAGGTTTTTCACGACTGTAGCGATGATACGTCGATCGGAGATAGTGATGGGACCTCATCGGAGCTTGTAACTGTAGATACTAATTGA 3024 43.25 MIDVNRNPIAVTIYTFSNHGMIDVDLLHFCLQKSNLPKAIFQELKMKELMGLQVIFFMSIFLHLNRISTATVQNTTSNPVPVKVGVVLDLDTWTGTMGSSCIEMALSDFYASHSHYKTRINLYIRDSKNDVIGAAAAALDLIKNVQVQAILGPQSSMQADFVINLGSKAQVPIISFSATSPFLTSLRSPYFFRAAQNDSSQVKAISAIVKEFGWRQVVPIYVDNEFGEGIIPYLTDALQEANSRVPYRSIIPPSASDDQIGQELYKLMTMQTRVFVLHMLPSLASKLLIKAKEIGMMEKGFAWIVTNSISENLGSLDDSIIDAMEGVLGVKTHVRERAAVDKLGLKLRRKYNQNDTSFASAELNIFGLWAYDAAWALASAFGRVGPSNFGYSSNSSFSTNLTDLESFGVGQNVQGLLDALLSTRFKGLVGEFVLKNRQLESTDFQILNVVGKGERGVGFWTQEGGLSKVFYTKGISVNSTTSNASLRTIIWPGDTNEVPKGWENILFNNKKLRIGVPALSDGFIEFVSINYDNNTNKTTVAGGYSIDVFDAVVQALPYAVNYEYIPFAKPNGEMAGTYNDLAYQVFLGNYDAVVGDVTIISNRSLYVDFTLPYTESGVSMIVPITKDASKGLVFLKPLTTGLWLTSGAFFVFIGLVVWFLEHRINDDFRVAPLWYQITTGLGFSFSTMTFAQKEQVTGNLARIVVIVWCFVVLILTQSYTASLASLLTIQKFKPAITDVKQLIENGDRVGYQKASFVYNILKDYWKFDPSNLVPYTSRDQLLELLTNGSAKGGISAAIDEIPYLQVFLSKHCSQYTIHGPIYRTAGFGFVFPIGSSLLGDVSRAILNVTEGEIMEQINKKWIEEESNCASSFPTSGALGLDIFLDLFLISGGTAVVAVIVFVVIFGFKEKTRLKENVLSKPQLGEKLKELLKLYHEPDSTFHTDRAQGGELSVDVGHMSHVEVQTGSLDISIPESGAESEVFHDCSDDTSIGDSDGTSSELVTVDTN 1007
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11066815 11070535 - Conep07aG0168600.1 Cone7ag1637 442233

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1637 1007 CDD GluR_Plant 510 862 - -
Cone7ag1637 1007 Pfam Receptor family ligand binding region 101 451 IPR001828 -
Cone7ag1637 1007 SUPERFAMILY Periplasmic binding protein-like II 488 863 - -
Cone7ag1637 1007 CDD PBP1_GABAb_receptor_plant 83 470 IPR044440 -
Cone7ag1637 1007 Gene3D - 509 631 - -
Cone7ag1637 1007 FunFam Glutamate receptor 631 762 - -
Cone7ag1637 1007 Gene3D - 632 763 - -
Cone7ag1637 1007 FunFam Glutamate receptor 511 632 - -
Cone7ag1637 1007 PIRSF IGluLR_plant 49 989 IPR017103 -
Cone7ag1637 1007 Gene3D - 809 870 - -
Cone7ag1637 1007 MobiDBLite consensus disorder prediction 983 1007 - -
Cone7ag1637 1007 SMART GluR_14 511 864 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cone7ag1637 1007 FunFam Glutamate receptor 197 351 - -
Cone7ag1637 1007 SUPERFAMILY Periplasmic binding protein-like I 81 493 IPR028082 -
Cone7ag1637 1007 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 82 929 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Cone7ag1637 1007 Gene3D - 199 360 - -
Cone7ag1637 1007 MobiDBLite consensus disorder prediction 991 1007 - -
Cone7ag1637 1007 Gene3D - 409 508 - -
Cone7ag1637 1007 Pfam Ligand-gated ion channel 641 891 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cone7ag1637 1007 Pfam Ligated ion channel L-glutamate- and glycine-binding site 526 623 IPR019594 GO:0015276(InterPro)|GO:0016020(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1637 K05387 - - cit:102628154 922.154
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone7ag1637 Cone-Chr7:11066815 Cone7ag1639 Cone-Chr7:11075409 0 dispersed
Cone7ag1636 Cone-Chr7:11060078 Cone7ag1637 Cone-Chr7:11066815 0 tandem
Cone7ag1637 Cone-Chr7:11066815 Cone7ag1638 Cone-Chr7:11071332 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g635 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone7ag1637 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy03g01061 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000144 7 5 8 3 3 6 2 4 6 9 4 4 7 6 7 9 4 15 6 5 12 6 5 10 9 7 3 6 6 18 202