Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1638 ATGGTGAAGAAGAACCCATTAATCCTTCTCTCTTTCTTCATATCATTTTCTGTTTCTCTCGGAGGTATATTTGCAGTAGATCAGCAGAACTCGACAACAAACCCAGTCCAAGTGAAGGTGGGAGTGGTCTTAAGTTTGGAGACGCGGACAGGGACGATGGGTTGGAACTGTATTGAGATGGCTCTCTCTGATTTCTATGCTTCTCATTCTCATTACAAGACCAGGATTGTCCCCACCTTTAGGGACTCTAAAAACGATGTCGTCGGAGCAGCTGTAGCAGCTTTGGACCTTATAAAAAACGTCCAAGTTGAAGCTATAATAGGCCCAGAAAGTTCCATGCAAGCAGACTTTGTTATTGATCTGGGCTCAAAAGCCCAAGTGCCCATCATTTCATTCTCCGCAACAAGCCCGTCCCCCACATCCCTCCGAAGTCTATACTTTCTCCGGGCAGCCCAAAACGATTCCTCTCAAGTCAAAGCCATAAGCTCAATAGTCAAAGCATTTGGTTGGAGAGAAGTTGTCCCAATCTACGTAGACAATGAATTCGGGGAGGGAATCATCCCCTACTTGACAGATGCAATGGAAGATGTAAACACTCTGGTCTCATACCGCAGTCTCATCCCTCCCTCAGCTTCTGATGATCAAATTGGTAAAGAGCTCTCCAATCTAATGAAAAAGCGAACTCGAGTCTTTATCGTTCACATGTACCCTGATCTTGCTTCTAAGCTTTTCACCAAGGCCAAAGAGATTGGAATGATGGAAAAGGGTTATGCTTGGATTATTACAAATTCAATAGGTGACTACATTTCTTCATTGAATACTTCAGCTCTGAATGCAATGCAAGGGGTAATAGGGATAAAGACATATGTTCAGGAATCAGCAAGGTTCCACAAGTTAACAGCGCAATGGAGTAAGAGCTGGAATAGGAAACAGACAAACTTTGACACGCCGGAACTGGATATAGTGGGCTTATTGGCTTACGATGCTGCTTGGGCTCTAGCCTTGGCGGTTGAACAGGCTGGGGAAACAAACTTGGGTTATCATACAAACGCAAAGTCCTCAACTAACTTAACAGATCTAGAAACTTTTGGGGTCAGTAAGAATGGTGGGAAACTCCGTGATGCATTGTTGAAAACTACATTCGAAGGGTTGGCTGGAAAATTCGTTCTTGTTAATAGACAATTAAAATCGACAAATTTTCGAATATTAAATGTGATTGGTGATCAAAAAGCGAAATGGATTGGATTTTGGACACCTGAAGCAGGATTATCAAAAGTTTTGGATATAAAAAGTAGTAGTACACACTATTCTGCTTCGAATGCAAGTTTAGGTGCAATAACATGGCCAGGAGACACGACAGGGATTCCTAAAGGATGGGAGTTTCCGATAAACGGGAAAGCTTTGCGGATTGGAGTTCCGGTGAAAGAGGGTTTCCGTGAATTTGTTTCAGTCACGCATGATAACAATACGAACACAACGACAGTGAATGGTGGATATTGCATAGACGTATTCGAAGCAGCTTTGAAGGCATTACCTTACAATGTCACCTATGAATACATTCCCTTTGCAAAGCCAAACGGAGAAATGAACGGCACTTACGATGATATGGTCTGTCAAGTTTATCTCGGGAACTTTGATGCAGTTGTCGGGGATGTGGCAATCATAGCAAGTAGATCTCTGTTCATAGATTATACTTTGCCATATACGGAGTCGGGCGTATCTATGGTCGTGCCAATTAAAGGTGCCTCAAGGAAGAAAGCATTGGCCTTTTTGAAGCCTTTAACCTGGGATCTTTGGCTCACAAGTGCTTGTTTCTTTGTTTTTATCGGGGTCATCGTATGGTTTCTCGAACATCGAGTAAACGAGGAATTCAGAAAAGGACCACTTCTACATCAGATTGCAACGAGCCAATGGTTCTCTTTTTCAACTATGTTTTTTGCTCAAAGGGAGAAAGTGTCTAGTAACTTGGCGAGGATCGTAGTGATTGTGTGGTGTTTTGTTGTTCTTATCCTAATTCAAAGTTACACTGCCAGTTTGACTTCACTCTTGACAATAGAACAGCTCCGACCAAGTGTTGCTGATGTGAATGAACTTTTAAAGAGTGGAGCAAAAGTCGGTTACCCAAAGGGTTCTTTCGTCTACAATATGTTAAAATCATTGAAATTTGATGAGTCTAATCTCGTAAGCTACACCTCTTCTAACGAGATGCATGAACTTTTCCAAAAAGGAAGTGGTAATGGTGCTATTGCTGCTGCTTATGATGAAATTCCTTTCATCAAGGTTTTCCTTTCCAACCGTTGCTCCGAATATACCATGCAAGATCCGACGTATAGAACTGATGGACTTGGATTCGTTTTTCCAATCGGTTCGCCACTTGTGTCCGACATTTCAAGGGCAATTTTAAAGGTGACGGAGGGAGAAGAAATGGAGAGAATAAATCGGCATTGGTTTGGGAACCAATCTAATTGTTCAAGCTCTAGTATAGGGGTTACATCTACTAGTCTTAGTCTTGATAGTTTCTGGGGTCTGTTCGGCATTGCTGGGGGTACTGCGATAGTAGCTTTGCTCATATTTTTATGCGTTTTTGTTAGAAAGGAGAAAAACACGATCGAAAGAGATGTTGTCTCGAAGAAAAAGATACAAGATAAAATTATAGAGCTGTTGAAACTGTATGACAAAAAAGATGAAACATTCCACACTAGGACAGAAGCTGGTGCACGTGTATCAGATCAGAAGAGTAGCAACTCTGATGTTGCTAGTATACCTCCGGTCGTTGTGGAACCTTCAGCTGAGGTCGTTGAGTTCTCCGGACCGGTTACTTGGCCCAACAATTGGACAACGGATAGCGATGATTTGATGAGCATGGATAGTAATGTTGTTGATAGGTCACCGGTGAATGAGATTGAAGCTGTGCAAGAAAGGAATCAGACATAA 2934 42.19 MVKKNPLILLSFFISFSVSLGGIFAVDQQNSTTNPVQVKVGVVLSLETRTGTMGWNCIEMALSDFYASHSHYKTRIVPTFRDSKNDVVGAAVAALDLIKNVQVEAIIGPESSMQADFVIDLGSKAQVPIISFSATSPSPTSLRSLYFLRAAQNDSSQVKAISSIVKAFGWREVVPIYVDNEFGEGIIPYLTDAMEDVNTLVSYRSLIPPSASDDQIGKELSNLMKKRTRVFIVHMYPDLASKLFTKAKEIGMMEKGYAWIITNSIGDYISSLNTSALNAMQGVIGIKTYVQESARFHKLTAQWSKSWNRKQTNFDTPELDIVGLLAYDAAWALALAVEQAGETNLGYHTNAKSSTNLTDLETFGVSKNGGKLRDALLKTTFEGLAGKFVLVNRQLKSTNFRILNVIGDQKAKWIGFWTPEAGLSKVLDIKSSSTHYSASNASLGAITWPGDTTGIPKGWEFPINGKALRIGVPVKEGFREFVSVTHDNNTNTTTVNGGYCIDVFEAALKALPYNVTYEYIPFAKPNGEMNGTYDDMVCQVYLGNFDAVVGDVAIIASRSLFIDYTLPYTESGVSMVVPIKGASRKKALAFLKPLTWDLWLTSACFFVFIGVIVWFLEHRVNEEFRKGPLLHQIATSQWFSFSTMFFAQREKVSSNLARIVVIVWCFVVLILIQSYTASLTSLLTIEQLRPSVADVNELLKSGAKVGYPKGSFVYNMLKSLKFDESNLVSYTSSNEMHELFQKGSGNGAIAAAYDEIPFIKVFLSNRCSEYTMQDPTYRTDGLGFVFPIGSPLVSDISRAILKVTEGEEMERINRHWFGNQSNCSSSSIGVTSTSLSLDSFWGLFGIAGGTAIVALLIFLCVFVRKEKNTIERDVVSKKKIQDKIIELLKLYDKKDETFHTRTEAGARVSDQKSSNSDVASIPPVVVEPSAEVVEFSGPVTWPNNWTTDSDDLMSMDSNVVDRSPVNEIEAVQERNQT 977
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11071332 11075179 + Conep07aG0168700.1 Cone7ag1638 442234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1638 977 Gene3D - 155 320 - -
Cone7ag1638 977 FunFam Glutamate receptor 2.7 725 825 - -
Cone7ag1638 977 FunFam Glutamate receptor 153 309 - -
Cone7ag1638 977 SMART GluR_14 467 819 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cone7ag1638 977 FunFam Glutamate receptor 587 718 - -
Cone7ag1638 977 Gene3D - 469 587 - -
Cone7ag1638 977 Gene3D - 761 825 - -
Cone7ag1638 977 Gene3D - 588 722 - -
Cone7ag1638 977 FunFam Glutamate receptor 467 587 - -
Cone7ag1638 977 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 38 897 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Cone7ag1638 977 CDD GluR_Plant 466 817 - -
Cone7ag1638 977 PIRSF IGluLR_plant 5 922 IPR017103 -
Cone7ag1638 977 Pfam Ligated ion channel L-glutamate- and glycine-binding site 481 577 IPR019594 GO:0015276(InterPro)|GO:0016020(InterPro)
Cone7ag1638 977 Gene3D - 321 468 - -
Cone7ag1638 977 CDD PBP1_GABAb_receptor_plant 39 427 IPR044440 -
Cone7ag1638 977 Pfam Receptor family ligand binding region 57 407 IPR001828 -
Cone7ag1638 977 SUPERFAMILY Periplasmic binding protein-like II 442 819 - -
Cone7ag1638 977 Pfam Ligand-gated ion channel 595 849 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Cone7ag1638 977 SUPERFAMILY Periplasmic binding protein-like I 37 450 IPR028082 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1718 Cone-Chr4:12733455 Cone7ag1638 Cone-Chr7:11071332 0 dispersed
Cone6ag1711 Cone-Chr6:12917543 Cone7ag1638 Cone-Chr7:11071332 1.90E-54 dispersed
Cone7ag1635 Cone-Chr7:11055723 Cone7ag1638 Cone-Chr7:11071332 0 dispersed
Cone7ag1638 Cone-Chr7:11071332 Cone7ag1640 Cone-Chr7:11081929 2.19E-303 dispersed
Cone7ag1637 Cone-Chr7:11066815 Cone7ag1638 Cone-Chr7:11071332 0 tandem
Cone7ag1638 Cone-Chr7:11071332 Cone7ag1639 Cone-Chr7:11075409 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1638 K05387 - rcu:8265212 967.222