Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1644 ATGGCATCCAAGCTGTGCGATTCTTGCAAAACAACGACGGCTACTCTGTTCTGCCGCGCCGACTCCGCTTTTCTCTGCGTAGGCTGTGACACAAAGGTCCACGCGGCCAACAAGCTCGCTTCTCGACACGCGCGCGTTTGGGTCTGTGAGGTCTGCGAGCAAGCTCCGGCTCAAGTCGCGTGCAAGGCGGATGCAGCCGTTCTCTGCGCCGGCTGCGACCGTGACATCCACTCAGCTAACCCTCTCGCTCGCCGTCACGAGCGCGTTCCCGTGACTCCTTTCTACGACTCCGCTGTCAAACCTGGTGCCGCCGGTAACTCATTTGAAGGTCGTCGCCTCTCCGATGTAGATGAGGAAGCTAATCTCAGCAGGGATGAGGTAGAGGCTGCTTCCTGGCTGCTCCCGAACCCTAATTCCAAGGCGATTGAGAGTCCGGACCTGAATTCCAGTCAGTTCGTGTTTCCAGAAATGGATACGTATCTTAATCTTGATTACGGATCTGTTGATCTGGAATCGAAGGTAGAGGAACAGAGCAGCCCAGGCGCCGATGGAGTAGTACCGGTAGAAAGCAATAGCTTACAACATCCCATGGCGAACGGGAGCTACTTCGCCACAGGTTTAACCGAGGCCAAATCCTTTTCTTACGGTTACAACACGCACTCCGCAAGCCAGAGCTTATCTTCCTCATCTATGGAGGTTGCGGTGGTACCTGACGGCAGCGCCATGAACGATATATCAAATCCATACGCAAAACCTGCAGCAGAGCCGACAACAAATCAGGCGGTGCAAATTTCAGCAGCGGATCGGGAAGCGAGAGTGTTGAGGTACAGAGAGAAGCGGAAGAATCGCAAGTTTGAGAAGACGATCCGCTACGCCTCGAGAAAAGCTTACGCTGAGACGAGACCTCGAATCAAAGGAAGATTCGCTAAACGAACAGATGAAGTCTGGGGATACGGCGTCGTTCCGACTCTTGGATAG 978 54.09 MASKLCDSCKTTTATLFCRADSAFLCVGCDTKVHAANKLASRHARVWVCEVCEQAPAQVACKADAAVLCAGCDRDIHSANPLARRHERVPVTPFYDSAVKPGAAGNSFEGRRLSDVDEEANLSRDEVEAASWLLPNPNSKAIESPDLNSSQFVFPEMDTYLNLDYGSVDLESKVEEQSSPGADGVVPVESNSLQHPMANGSYFATGLTEAKSFSYGYNTHSASQSLSSSSMEVAVVPDGSAMNDISNPYAKPAAEPTTNQAVQISAADREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDEVWGYGVVPTLG 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11095778 11097227 + Conep07aG0169300.1 Cone7ag1644 442240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1644 325 ProSiteProfiles CCT domain profile. 269 311 IPR010402 GO:0005515(InterPro)
Cone7ag1644 325 CDD Bbox1_BBX-like 48 91 IPR049808 -
Cone7ag1644 325 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270(InterPro)
Cone7ag1644 325 CDD Bbox1_BBX-like 5 48 IPR049808 -
Cone7ag1644 325 Pfam CCT motif 269 311 IPR010402 GO:0005515(InterPro)
Cone7ag1644 325 SMART bboxneu5 1 48 IPR000315 GO:0008270(InterPro)
Cone7ag1644 325 SMART bboxneu5 49 91 IPR000315 GO:0008270(InterPro)
Cone7ag1644 325 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 4 316 IPR045281 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0009909(InterPro)|GO:0009909(PANTHER)
Cone7ag1644 325 Pfam B-box zinc finger 4 42 IPR000315 GO:0008270(InterPro)
Cone7ag1644 325 Pfam B-box zinc finger 46 91 IPR000315 GO:0008270(InterPro)
Cone7ag1644 325 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0169 Cone-Chr11:831280 Cone7ag1644 Cone-Chr7:11095778 2.97E-59 dispersed
Cone11ag0338 Cone-Chr11:1643363 Cone7ag1644 Cone-Chr7:11095778 6.05E-31 dispersed
Cone18ag1317 Cone-Chr18:9138154 Cone7ag1644 Cone-Chr7:11095778 3.09E-53 dispersed
Cone6ag0443 Cone-Chr6:2161648 Cone7ag1644 Cone-Chr7:11095778 1.10E-07 dispersed
Cone6ag0795 Cone-Chr6:4041890 Cone7ag1644 Cone-Chr7:11095778 7.83E-09 dispersed
Cone7ag1644 Cone-Chr7:11095778 Cone8ag1358 Cone-Chr8:10874011 2.69E-09 dispersed
Cone4ag1724 Cone-Chr4:12765271 Cone7ag1644 Cone-Chr7:11095778 9.42E-164 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46581 PF14438 SM-ATX 1.40E-26 CL0527 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1644 - - - 0.0