Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1648 ATGGCTACTTCTTCCTCCTTTCTGTCAAGCTTTTCAGTCACTGTTTTCCTTGTGTTAGTTCAATGTTTCCTCTTCTTCTCTTTCCAGAAGGGTTTTGCATTGAAATTAGGAACAGAAGAAGATCAAGTTTATCAGACTCATACAGTAGAGCTCTCATCTCTACTACCATCAACCTCTTGCCTTCAATCCACTCAAGGCTTGAAGAAGGAGGGAACGGCATCAATGAAGGTGGTGCATAAACATGGCCTATGTAGTAGTACTACTAAGCTCAAGAAAAACAAACTAAGTTCTATTCCAACTCAAACTCAAATTCTACTTCAAGACCAGGCTCGGGTAGATTCGATCCACGCCAAGCTTTCCAACAATGAGAAACACGGTTTAAGTAACTCAAAGGCCTCCACACTCCCGGCTAAGTCCGGTGCAACCATCGGGTCAGGAAATTATATAGTAACGGTGGGATTGGGTTCACCCAAGAAGGACCTCTCCCTTATATTTGATACTGGTAGTGATCTCACTTGGACCCAATGCCAGCCCTGTTTTCGGTATTGCTACAAGCAGAGGGAGACAATTTTCAATCCCACTCAATCAACTACTTATTCCAATATTTCTTGTACGTCACCCCTGTGCTCTCAACTTGCCTCTGCTACAGGAAATTCCCCTGGTTGCTCTGCTTCTACATGCTTGTACGGCATACAATATGGTGATCAATCATTTTCCGTCGGGTTTTTCGGCAAGGAAAGGCTAACCTTAACATCATCCGATGTTTTTGACGGCTTCCTGTTCGGCTGTGGAGAAAACAACCGCGGTCTCTTTGGTGGCGCGGCTGGCCTTCTAGGCCTCGGTCGAGACGGGATCTCTGTTGTTAAACAGACTGCAAATAATTACGGTCAAGTCTTTTCATATTGTCTACCTTCCACATCTAGTGGTACAGGGTTCCTTGTATTTGGTCGAGGCGATGACACGGCAGTGAAATACACACCTTTCTCTAGTATCTCAAGAAGTTCAACTTTTTACGGTCTTGACATAGTCAGCATAAGTGTAGGTGGACGTAAACTATCTATACCAGCCTCAACATTTTCGACATCGGGTTCAATCATAGACTCCGGCACGGTTATCACCAGACTGCCGCCGACAGCATATGATGCCGTAAAGGAGGAATTTCAAAAAGGGATGAAAAGCTACCCGAAAGTGGAAGCAGTTTCGATACTCGATACATGCTATGACTTGAGCAGTTACCAATCATTCACCATTCCGAAAGTAAGTTTTTTCTTCAGCAGTGGGGTGGAAGTGGGTCTACATTTCTCGGGAATCTTATATGTGGTATCAGAAAAACAAGTTTGTTTGGCACTTGCTGGAAATGGAGACGATAGCGACATAACGATATTCGGGAATACACAACAAAAGACATTGAAAGTGGTGTATGATGTTGGTGGTGGGAGAGTGGGTTTTAGAGGTAGTGGGTGTAGTTAA 1470 44.15 MATSSSFLSSFSVTVFLVLVQCFLFFSFQKGFALKLGTEEDQVYQTHTVELSSLLPSTSCLQSTQGLKKEGTASMKVVHKHGLCSSTTKLKKNKLSSIPTQTQILLQDQARVDSIHAKLSNNEKHGLSNSKASTLPAKSGATIGSGNYIVTVGLGSPKKDLSLIFDTGSDLTWTQCQPCFRYCYKQRETIFNPTQSTTYSNISCTSPLCSQLASATGNSPGCSASTCLYGIQYGDQSFSVGFFGKERLTLTSSDVFDGFLFGCGENNRGLFGGAAGLLGLGRDGISVVKQTANNYGQVFSYCLPSTSSGTGFLVFGRGDDTAVKYTPFSSISRSSTFYGLDIVSISVGGRKLSIPASTFSTSGSIIDSGTVITRLPPTAYDAVKEEFQKGMKSYPKVEAVSILDTCYDLSSYQSFTIPKVSFFFSSGVEVGLHFSGILYVVSEKQVCLALAGNGDDSDITIFGNTQQKTLKVVYDVGGGRVGFRGSGCS 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11114309 11116662 - Conep07aG0169700.1 Cone7ag1648 442244

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1648 489 Gene3D Acid Proteases 319 489 IPR021109 -
Cone7ag1648 489 Gene3D Acid Proteases 120 316 IPR021109 -
Cone7ag1648 489 Pfam Xylanase inhibitor C-terminal 338 484 IPR032799 -
Cone7ag1648 489 Pfam Xylanase inhibitor N-terminal 148 316 IPR032861 -
Cone7ag1648 489 FunFam Aspartyl protease AED1 317 489 - -
Cone7ag1648 489 FunFam Aspartyl protease AED1 124 316 - -
Cone7ag1648 489 PANTHER ASPARTYL PROTEASES 58 488 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Cone7ag1648 489 PRINTS Pepsin (A1) aspartic protease family signature 154 174 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Cone7ag1648 489 PRINTS Pepsin (A1) aspartic protease family signature 460 475 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Cone7ag1648 489 PRINTS Pepsin (A1) aspartic protease family signature 364 375 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Cone7ag1648 489 PRINTS Pepsin (A1) aspartic protease family signature 311 324 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Cone7ag1648 489 SUPERFAMILY Acid proteases 142 488 IPR021109 -
Cone7ag1648 489 ProSiteProfiles Peptidase family A1 domain profile. 148 484 IPR033121 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1648 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag1002 Cone-Chr15:8130155 Cone7ag1648 Cone-Chr7:11114309 1.00E-125 dispersed
Cone18ag0138 Cone-Chr18:729328 Cone7ag1648 Cone-Chr7:11114309 5.21E-123 dispersed
Cone19ag0723 Cone-Chr19:5982687 Cone7ag1648 Cone-Chr7:11114309 6.98E-94 dispersed
Cone19ag0726 Cone-Chr19:5993449 Cone7ag1648 Cone-Chr7:11114309 2.08E-07 dispersed
Cone4ag1729 Cone-Chr4:12786459 Cone7ag1648 Cone-Chr7:11114309 4.76E-295 dispersed
Cone6ag1227 Cone-Chr6:9673726 Cone7ag1648 Cone-Chr7:11114309 4.45E-54 dispersed
Cone7ag1519 Cone-Chr7:10555290 Cone7ag1648 Cone-Chr7:11114309 1.01E-21 dispersed
Cone7ag1648 Cone-Chr7:11114309 Cone9ag1207 Cone-Chr9:8711819 3.66E-50 dispersed
Cone14ag0573 Cone-Chr14:2834632 Cone7ag1648 Cone-Chr7:11114309 1.13E-102 transposed
Cone17ag0286 Cone-Chr17:1371189 Cone7ag1648 Cone-Chr7:11114309 4.62E-92 wgd
Cone20ag1122 Cone-Chr20:7681313 Cone7ag1648 Cone-Chr7:11114309 1.74E-90 wgd
Cone4ag1728 Cone-Chr4:12783585 Cone7ag1648 Cone-Chr7:11114309 5.83E-144 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g617 . . . . . . . . . . . . Car09g00340 . . . Cpe06g00279 . . . . . . . Cla05g01658 Cam05g1769 Cec05g1777 Cco05g1835 Clacu05g1759 Cmu05g1645 Cre05g1773 Cone4ag1728 Cone7ag1648 Cone17ag0969 . . . . . . . . . . . . . . . Cmo09g00393 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005907 2 1 0 1 2 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 0 1 1 1 2 2 2 36