Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1656 ATGACGTCCTCAAGAAACCCTTCTTACACTAACCTAACACCCTGCAACCATCTTGCAGATTACAAGCTCAAACATGGCTTAGTCGGCTACAAATCAATTCAAAACTTGATCCAAACCTCCCCAAATGGAAGAACCTCTCTTCATAAACTCGATTCAAACATATCCAGATGCACTTCTTGTTATGGTTATTCAAAAAGACACTATTTTTGCTTGATTTGCTCTTCAATCTCTTGCTCGGACCATACTTCTTCTCTTCATACCCAGTCCGATACTGGGCACGATATTTCTGTTGACATCCTTAGGGCTGAGCTCTATTGCTTCCCCTGCTCTGATCAAGTTTATGATCCTGATTTTGATAAGATTGTGATGTCTAGTCACATCATGGGCGCGCCCAAGATTCAAGAGAGATCTGAGAGTATTGGTCAGAGATTGAGCAAGAGGAGACGACTAGCTTCTTCTTCTTCTTCTCCTCCTACTGGTTTAAGAACGGAGCTTGTGGATTTGAAGAAGCTGAAACCATTGACTTGTATTAGAGACAAGAAGGCGAAATCTTGTTACCCATTAGGTTTGAGGGGATTGAATAATTTGGGGAATACTTGTTTTATGAATTCTGTTCTTCAAGCATTACTTAATGCTCCTCCTTTGAGAGACTACTTCTTGACTGATCAGCATAGCAGAAAAATTTGCCGGAAAAGATCAGGGGATCAGTTATGTCTTCAATGCGACATTGCCCGGATTTTTGCAGCAGTATTTTCCGGGGACCGGAATCCTTATAGTCCTGCTCAATTTCTTTACAGTTGGTGGCAGCATTCTGCAAATTTCGCGAGTTACGAGCAGCAAGACGCTCATGAGTTCTTCATTTCGGCATTAGAATGGATCCATGAGAAAGAAGGGAAATCCAAGAACCAAAGTAAAGATAATATAGATTGCAAGTGCATTGCTCACAAGGCATTTTCCGGGCAGTTAAGATCCGACGTCACATGCCTGACCTGTGGGTTCACTTCAACAACTTTCGACCCTTGTGTCGATATTTCTCTCAATTTAGACTCAAACAATCACTCCTTAAGAGACATATCTACTCTATCCAGCTGCCTAAACTTATTCACAAGGCCAGAACAATTAGGGTCCGACCAGAAACTATTCTGCCAAAACTGTCAAGAAAGGCGAGACTCATTGAAACAAATGTCAATAGGAAAGCTACCATTAGTACTATGCTTGCATATTAAACGGTTTGAGCATTCTTCTATCAAGAACATGTCGAGAAAAATAGACTGCCATTTGCACTTTCCGTTCTCCTTAGAGATGAGGCCGTATTTGTCGTCCTCTATTGTTAGTAAGAGATTTGGGAACAGGATATTTGCTTTGGAGGGAGACGATTCGGATGGTTCGAGCAAGTTTGAGATATTTGCAGTGATTGCTCATTCGGGTGGATTGGAAGCCGGACATTATGTGACTTATTTGAGGTTAAAGAATCAATGGTATAAATGTGATGATGCTTGGATTACCGAGGTGGACGTTTGGGTGGTCAGAAATTGTCAGTGTTATATGATGTTTTATTTGCAGAAAAGCTCTGCTTCTTCTCCAAAACAGAACGGGGATTTGATTTAA 1608 41.23 MTSSRNPSYTNLTPCNHLADYKLKHGLVGYKSIQNLIQTSPNGRTSLHKLDSNISRCTSCYGYSKRHYFCLICSSISCSDHTSSLHTQSDTGHDISVDILRAELYCFPCSDQVYDPDFDKIVMSSHIMGAPKIQERSESIGQRLSKRRRLASSSSSPPTGLRTELVDLKKLKPLTCIRDKKAKSCYPLGLRGLNNLGNTCFMNSVLQALLNAPPLRDYFLTDQHSRKICRKRSGDQLCLQCDIARIFAAVFSGDRNPYSPAQFLYSWWQHSANFASYEQQDAHEFFISALEWIHEKEGKSKNQSKDNIDCKCIAHKAFSGQLRSDVTCLTCGFTSTTFDPCVDISLNLDSNNHSLRDISTLSSCLNLFTRPEQLGSDQKLFCQNCQERRDSLKQMSIGKLPLVLCLHIKRFEHSSIKNMSRKIDCHLHFPFSLEMRPYLSSSIVSKRFGNRIFALEGDDSDGSSKFEIFAVIAHSGGLEAGHYVTYLRLKNQWYKCDDAWITEVDVWVVRNCQCYMMFYLQKSSASSPKQNGDLI 535
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11140604 11143020 + Conep07aG0170500.1 Cone7ag1656 442252

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1656 535 SUPERFAMILY Cysteine proteinases 189 519 IPR038765 -
Cone7ag1656 535 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 49 523 IPR050185 -
Cone7ag1656 535 SUPERFAMILY RING/U-box 13 121 - -
Cone7ag1656 535 ProSiteProfiles Zinc finger UBP-type profile. 38 132 IPR001607 GO:0008270(InterPro)
Cone7ag1656 535 FunFam Ubiquitinyl hydrolase 1 185 526 - -
Cone7ag1656 535 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 191 522 IPR028889 -
Cone7ag1656 535 Gene3D Cysteine proteinases 186 528 - -
Cone7ag1656 535 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 192 207 IPR018200 GO:0004843(InterPro)
Cone7ag1656 535 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 131 IPR013083 -
Cone7ag1656 535 Pfam Zn-finger in ubiquitin-hydrolases and other protein 57 117 IPR001607 GO:0008270(InterPro)
Cone7ag1656 535 Pfam Ubiquitin carboxyl-terminal hydrolase 191 519 IPR001394 GO:0004843(InterPro)|GO:0016579(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1656 K11366 - - csv:101210858 746.117
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0469 Cone-Chr16:6899934 Cone7ag1656 Cone-Chr7:11140604 8.26E-23 dispersed
Cone2ag0544 Cone-Chr2:3030029 Cone7ag1656 Cone-Chr7:11140604 1.42E-182 dispersed
Cone7ag1656 Cone-Chr7:11140604 Cone8ag0473 Cone-Chr8:3149747 1.25E-40 dispersed
Cone4ag1737 Cone-Chr4:12811541 Cone7ag1656 Cone-Chr7:11140604 0 wgd
Cone4ag0602 Cone-Chr4:2753885 Cone7ag1656 Cone-Chr7:11140604 2.76E-40 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g597 Blo01g01420 . Bda01g00659 . . Bpe02g00532 . . . . . . Car09g00347 . . . . . . . . . . . Cla05g01666 Cam05g1780 Cec05g1786 Cco05g1846 Clacu05g1769 Cmu05g1653 Cre05g1782 . Cone7ag1656 . . Lsi04g01349 Csa03g04488 Chy04g00212 . . . . . . . . . Sed13g1952 . Cmo09g00400 . . . . . . Bhi09g03035 Tan01g3536 Cmetu07g1151 . Hepe01g1951 Mch11g0488 . . . . . . . . . . . Cme07g00137
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012836 1 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 0 1 1 1 0 1 1 1 1 28