Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1672 ATGATGGTTGAGCAGAGTATAGAGGATCCAAACGACCAGTTCCCGATCGGTATGCGTGTTCTAGCCGTCGACGACGATCCTACTTGCCTCTTGCTCTTAGAAACTCTTCTTCGTCGTTGCCAATATCACGTCACTACAACAAATCAGGCAATAACAGCTCTAAGAATGTTGAGAGAGAACAAGAACAAGTTTGATCTAGTTATCAGTGATGTCCACATGCCTGACATGGATGGGTTTAAGCTTCTTGAGCTTGTTGGCCTCGAGATGGATCTGCCTGTCATTATGTTATCTGCGAATGGAGATACAAAGCTTGTCATGAAGGGGATAACTCATGGAGCCTGTGATTATTTGCTTAAACCCGTTCGGATTGAGGAACTACAGAATATATGGCAGCATGTGATTCGTAGAAAGAAGTTCGATCCAAAGGACAAGAGTAATTCTGGGAATCATGACAAGACTCAGTTTGGGAACGGAGAAGGAGGATTGGCCGGGATGGGCAATGTGGATCAAAGTGGGAAGCTCAAAAAAAGAAGGAAGTACCCAAATGAAGATGACGATGAGGAGAATGATGATAACGGGATGGATATTGAAGACCCGTCGGCCCAAAAGAAGCCTCGGGTCGTTTGGTCCGTTGAGCTCCATCGCAAATTCGTAAATGCAGTTAACCAGCTCGGCATAGACAAGGCTGTGCCTAAGAGAATCCTAGATTTGATGAATGTAGAAAAGCTTACAAGGGAAAATGTAGCAAGTCATCTCCAGAAATATAGGCTTTACCTGAAAAGAATCAGCTCAGTGGCAAGCCTGCAGCAACATTCTACATTCACAGATTCTTCCTACATGGAAATCAATTCCCTTAACCAAATCAGAAACTTGCATACTTCAGCCGGATCCTCTTCACAGTATCATAACAACGGTTATTTTCGATCCAACCCAAATACTGGAATGCTTGATAGATTGAATACACCGTATAATATGGGAATCCAGACGCTTTCTTCTCCTTCCGGAAAATACCGATTGAATAACTCGATCAACTATAACAAGCATAATGTCAACTTTGTTGGAGATTTCTCCCCTGCTCTGCGGATTCTAAACGACCTTCCTGATGAAAAAATGACTGTTCCTAGCTTGAGCAATAATCCTACTTTTAGTTTATCTAATATGTCCTTCGTATCATCGTCCGGACAGTGTCAAGAAACACAAGGAGGTGTACAATTCGGAAATCACTTTTCTCAATCTTCTGTTTCACCCGGTTTTGTAAATAACCAAGCTTGGATGACCGCTGCCCAGTCGTCCAGGGTCGAAGCTAATGCTTTTCTACCAAGTTCGTCTCAAATGAGTAGTAGCAGTAGTAGTATTAGATGCAATCAGCAGATAATTACGGAAATGCCACTTCAAGGATGGGAGAATTCTGTGGTTGATGTTAATGGTGGAGCGGCTCAAATGTTGGGGAATGGAAGTATGGTTTTTTCCGGGAATGAGGATTTCGATTTGATCGGAAGGTCGGAGTTACTGGATCATCCGGAGAACGTGAAAGACAGTTTCGGTTCCTTGGAAGATTTGGCTCGGGCCATGACCAAACAGGAACAAGTTAAGGAGAAATTATTGGAAGGGGAGTTTGGATGCGATAGTACTTATGCTATCGGAACATGCATCTGA 1656 43.18 MMVEQSIEDPNDQFPIGMRVLAVDDDPTCLLLLETLLRRCQYHVTTTNQAITALRMLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANGDTKLVMKGITHGACDYLLKPVRIEELQNIWQHVIRRKKFDPKDKSNSGNHDKTQFGNGEGGLAGMGNVDQSGKLKKRRKYPNEDDDEENDDNGMDIEDPSAQKKPRVVWSVELHRKFVNAVNQLGIDKAVPKRILDLMNVEKLTRENVASHLQKYRLYLKRISSVASLQQHSTFTDSSYMEINSLNQIRNLHTSAGSSSQYHNNGYFRSNPNTGMLDRLNTPYNMGIQTLSSPSGKYRLNNSINYNKHNVNFVGDFSPALRILNDLPDEKMTVPSLSNNPTFSLSNMSFVSSSGQCQETQGGVQFGNHFSQSSVSPGFVNNQAWMTAAQSSRVEANAFLPSSSQMSSSSSSIRCNQQIITEMPLQGWENSVVDVNGGAAQMLGNGSMVFSGNEDFDLIGRSELLDHPENVKDSFGSLEDLARAMTKQEQVKEKLLEGEFGCDSTYAIGTCI 551
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11219297 11222161 - Conep07aG0172300.1 Cone7ag1672 442268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1672 551 Pfam Response regulator receiver domain 20 128 IPR001789 GO:0000160(InterPro)
Cone7ag1672 551 SUPERFAMILY CheY-like 17 139 IPR011006 -
Cone7ag1672 551 SUPERFAMILY Homeodomain-like 202 261 IPR009057 -
Cone7ag1672 551 FunFam Two-component response regulator 200 263 - -
Cone7ag1672 551 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160(InterPro)
Cone7ag1672 551 SMART REC_2 18 130 IPR001789 GO:0000160(InterPro)
Cone7ag1672 551 PIRSF RR_ARR_type-B 1 534 IPR017053 GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro)
Cone7ag1672 551 Gene3D - 200 263 - -
Cone7ag1672 551 PANTHER TWO-COMPONENT RESPONSE REGULATOR 13 328 IPR045279 GO:0009736(InterPro)
Cone7ag1672 551 Pfam Myb-like DNA-binding domain 206 256 IPR001005 -
Cone7ag1672 551 CDD REC_typeB_ARR-like 20 134 - -
Cone7ag1672 551 NCBIfam myb-like DNA-binding domain, SHAQKYF class 204 257 IPR006447 GO:0003677(InterPro)
Cone7ag1672 551 FunFam Two-component response regulator 18 171 - -
Cone7ag1672 551 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 201 260 IPR017930 -
Cone7ag1672 551 Gene3D - 18 159 - -
Cone7ag1672 551 MobiDBLite consensus disorder prediction 140 201 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag1096 Cone-Chr19:7950857 Cone7ag1672 Cone-Chr7:11219297 9.83E-89 dispersed
Cone4ag0123 Cone-Chr4:575340 Cone7ag1672 Cone-Chr7:11219297 1.11E-83 dispersed
Cone7ag0120 Cone-Chr7:505034 Cone7ag1672 Cone-Chr7:11219297 1.00E-86 dispersed
Cone7ag1672 Cone-Chr7:11219297 Cone8ag0716 Cone-Chr8:7215291 6.91E-87 dispersed
Cone20ag0334 Cone-Chr20:1496150 Cone7ag1672 Cone-Chr7:11219297 6.42E-69 wgd
Cone4ag1755 Cone-Chr4:12894931 Cone7ag1672 Cone-Chr7:11219297 0 wgd
Cone4ag0611 Cone-Chr4:2810489 Cone7ag1672 Cone-Chr7:11219297 5.62E-119 wgd
Cone7ag0579 Cone-Chr7:2779087 Cone7ag1672 Cone-Chr7:11219297 7.93E-119 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46583 PF00069 Pkinase 1.20E-66 CL0016 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1672 K14491 - csv:101215220 498.434