Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1675 ATGGCCCGGCAGCAACAGCGATACCGTGGGGTCCGACAACGCCACTGGGGCTCTTGGGTGTCCGAGATTCGCCATCCTCTATTGAAGACGAGGATATGGTTAGGGACGTTTGAAACAGCAGAAGACGCAGCAAGAGCGTACGATGAAGCAGCGAGGCTAATGTGTGGGCCCAGAGCCCGAACCAACTTCGCATATAATAGCAGCAACAACACTTCTTCATCGAAGCTTCTCTCCGCCAATTTGACAGCGAAATTGCACAGATGCTATTTAGCTTCTCTGCAGCTGACCAATCAGTTTCCAGCACAAGATGATCACGCCAACACGTCAGATTCACAGTCGCCACGTGTCATTGGGACAGGTGGCATTGTGGAAACGAGTAGCAGCAGCCATTGTACTAGTAATATAACTACACGGTTGCAGGATAAGAGACCCGTAGCTGATTATCATCACCAAGCAGCTGATCAGAATAATAATTGGATGGTAATGAAGAAAGTGAAGGTGGAGAGTAATAGTAGCAGTAGTTTCGAGCAATTCAAGCCACTTGAAGATGATCATATAGAGCAGATGATTCAGGAATTGCTTCACTATGGCTCTATTGAGCTTTGCTCTATTAATATGCATTCTTAA 627 46.73 MARQQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFAYNSSNNTSSSKLLSANLTAKLHRCYLASLQLTNQFPAQDDHANTSDSQSPRVIGTGGIVETSSSSHCTSNITTRLQDKRPVADYHHQAADQNNNWMVMKKVKVESNSSSSFEQFKPLEDDHIEQMIQELLHYGSIELCSINMHS 208
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11230679 11231612 - Conep07aG0172600.1 Cone7ag1675 442271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1675 208 SMART rav1_2 7 70 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag1675 208 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 4 176 - -
Cone7ag1675 208 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag1675 208 Pfam AP2 domain 7 56 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag1675 208 CDD AP2 6 65 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag1675 208 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag1675 208 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone7ag1675 208 SUPERFAMILY DNA-binding domain 7 65 IPR016177 GO:0003677(InterPro)
Cone7ag1675 208 FunFam Ethylene-responsive transcription factor 2 6 65 - -
Cone7ag1675 208 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag0578 Cone-Chr18:2866079 Cone7ag1675 Cone-Chr7:11230679 5.28E-51 dispersed
Cone4ag1792 Cone-Chr4:13040697 Cone7ag1675 Cone-Chr7:11230679 2.27E-24 dispersed
Cone7ag0635 Cone-Chr7:3242891 Cone7ag1675 Cone-Chr7:11230679 1.26E-29 dispersed
Cone7ag1675 Cone-Chr7:11230679 Cone7ag1701 Cone-Chr7:11339494 1.54E-24 dispersed
Cone17ag0995 Cone-Chr17:7664321 Cone7ag1675 Cone-Chr7:11230679 8.13E-67 wgd
Cone17ag0252 Cone-Chr17:1193973 Cone7ag1675 Cone-Chr7:11230679 2.23E-18 wgd
Cone20ag0337 Cone-Chr20:1511034 Cone7ag1675 Cone-Chr7:11230679 2.47E-68 wgd
Cone4ag1757 Cone-Chr4:12906148 Cone7ag1675 Cone-Chr7:11230679 4.44E-128 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46584 PF13639 zf-RING_2 1.60E-13 CL0229 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1675 - - - 0.0