Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1682 ATGGCTTACCCCAACCACCTTTCATCACAAGACCTTCCCCTTCACCACTTCACCGACCAAATCGGTCTCCAGCAGCAACAGCAACAAACCAACCAACCACTCTCCGATAACACCCTACGAACCATCTTGTCAGACCCGTTGACCCGTCCTGACCCGAGCTCCAAATCCGACCACCATCACCACCACCAGGTCCATCATCCGCTCCAAGCAACACCCAATTGGCTCAACAACGCACTTCTCCGCGCGCAAAACCCTCACGCTCACTACTCAACCGACACAACTAACGCCGCCGATTCCGGCCACACCAACTTTCTCAACCTCCACACAGCAACTGCCTCCGATCACTCCACAGCATCGCACTCATCCAACCAATGGCTCTCACGCCCGATCCTCCACCGTAACCATAGTGACGTCATAGACGACGTTAACGTTGCCACAGGAGACCCCATGATCGGAGCCGCCGCGACGGGCACGCTGTCCCACGATTCAGCTGACATGAAGAACAACGCAGGCGGAGGCGCTGCAAACAGTACGAGCGTGGAGGGATTGAACAAGAACGAAAGCGGGAGGGTGGAAGAAAGCGTAGGTGGAGAAATGAATTGGCAGAATGCGAGGTCAAAGGCCGAGATTCTGGCCCATCCACTTTACGAGCAGCTGCTCTCGGCCCATGTGGCCTGCCTACGGATCGCCACGCCGGTGGACCAGCTCCCGAGGATCGACGCCCAGCTTGCTCAGTCGGAAAATGTTATGGCCAAGTACTCCTCCTTGGGGCATGGGGCCCAGCCTATGGTTGGAGATGACAAAGAGCTCGATCAGTTCATGACACATTATGTCCTGTTGCTTTGCTCCTTCAAAGAACAACTCCAGCAACATGTCCGGGTCCATGCAATGGAGGCTGTAATGGCTTGTTGGGAGATTGAACAATCCCTACAAAGCTTAACAGGAGTTTCTCCCGGCGAAGGTACAGGTGCCACGATGTCTGATGACGAAGACGACCCGATAGATGGAGATGCCAACTTATTTGATGGAAGCTTAGAGGGAGATACCATGGGCTTTGGCCCACTCATCCCTACTGAGAGTGAGAGGTCCTTGATGGAGAGGGTTAGACAAGAACTAAAGCATGAATTAAAGACAGGTTACAAGGAGAAAATAGTGGACATAAGGGAAGAAATATTAAGGAAGAGAAGAGCAGGAAAACTCCCTGGTGACACCACCTCTGTCCTTAAAGCATGGTGGCAATCACACTCTAAGTGGCCTTACCCTACAGAGGAAGATAAGGCAAGATTGGTACAAGAAACAGGTCTACAGTTGAAGCAGATAAACAACTGGTTCATTAACCAGAGGAAGAGAAACTGGCACAGTAATCCTTCAACTTCTACGGTCTTAAAGAGCAAACGCAAAAGAAGTAATGCAGGTGATAACAACGGCAGTGACCGGTTCATGTGA 1446 51.8 MAYPNHLSSQDLPLHHFTDQIGLQQQQQQTNQPLSDNTLRTILSDPLTRPDPSSKSDHHHHHQVHHPLQATPNWLNNALLRAQNPHAHYSTDTTNAADSGHTNFLNLHTATASDHSTASHSSNQWLSRPILHRNHSDVIDDVNVATGDPMIGAAATGTLSHDSADMKNNAGGGAANSTSVEGLNKNESGRVEESVGGEMNWQNARSKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSENVMAKYSSLGHGAQPMVGDDKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDEDDPIDGDANLFDGSLEGDTMGFGPLIPTESERSLMERVRQELKHELKTGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSTVLKSKRKRSNAGDNNGSDRFM 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11259269 11263359 + Conep07aG0173300.1 Cone7ag1682 442278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1682 481 Gene3D - 392 453 - -
Cone7ag1682 481 Pfam KNOX2 domain 264 314 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cone7ag1682 481 SUPERFAMILY Homeodomain-like 393 456 IPR009057 -
Cone7ag1682 481 MobiDBLite consensus disorder prediction 448 481 - -
Cone7ag1682 481 MobiDBLite consensus disorder prediction 161 185 - -
Cone7ag1682 481 Pfam ELK domain 371 392 IPR005539 GO:0003677(InterPro)
Cone7ag1682 481 ProSiteProfiles 'Homeobox' domain profile. 391 454 IPR001356 GO:0003677(InterPro)
Cone7ag1682 481 FunFam homeobox protein knotted-1-like 3 isoform X1 392 453 - -
Cone7ag1682 481 SMART ELK_2 371 392 IPR005539 GO:0003677(InterPro)
Cone7ag1682 481 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 174 454 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cone7ag1682 481 Pfam KNOX1 domain 207 247 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Cone7ag1682 481 SMART KNOX1_2 204 248 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Cone7ag1682 481 MobiDBLite consensus disorder prediction 160 185 - -
Cone7ag1682 481 MobiDBLite consensus disorder prediction 315 334 - -
Cone7ag1682 481 ProSiteProfiles ELK domain profile. 371 391 IPR005539 GO:0003677(InterPro)
Cone7ag1682 481 Pfam Homeobox KN domain 411 450 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone7ag1682 481 MobiDBLite consensus disorder prediction 448 465 - -
Cone7ag1682 481 SMART KNOX2_2 260 315 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cone7ag1682 481 CDD homeodomain 394 455 IPR001356 GO:0003677(InterPro)
Cone7ag1682 481 SMART HOX_1 393 458 IPR001356 GO:0003677(InterPro)
Cone7ag1682 481 MobiDBLite consensus disorder prediction 42 67 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0737 Cone-Chr6:3726221 Cone7ag1682 Cone-Chr7:11259269 3.30E-122 dispersed
Cone7ag1308 Cone-Chr7:9610040 Cone7ag1682 Cone-Chr7:11259269 2.64E-32 dispersed
Cone7ag1682 Cone-Chr7:11259269 Cone9ag0742 Cone-Chr9:3527506 2.10E-126 dispersed
Cone17ag0998 Cone-Chr17:7678344 Cone7ag1682 Cone-Chr7:11259269 1.80E-153 wgd
Cone20ag0339 Cone-Chr20:1520759 Cone7ag1682 Cone-Chr7:11259269 8.28E-149 wgd
Cone4ag1764 Cone-Chr4:12938180 Cone7ag1682 Cone-Chr7:11259269 1.32E-307 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46585 PF14647 FAM91_N 1.20E-83 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1682 - - - 0.0