Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1690 ATGCTGCATGCAGAAGCCAAGGAAATGCAGAACATATTTAGAGTGTGGGCCTACAAGGAAGGAGATGAGCCCATTTTCCACAAGGCTCCCATGAATGATATCTACTCCATTGGAGGTCAGTTCATGGCTGAAGTGGAAAGCGGGAAGAGTCAATTTTCGACCCGTAACCCGGACGAGGCTGCTGCCTTCTACCTTCCATTAAGCGTCGTCAACATAATGCGATACGTCTACAGGCCTTACACTAACTACTCTCGTGATAGATTGCAGGACATTGTCAAGGACTATATCGAGGCCATGTCGCATAGATATCCGTATTGGAACGCGAGCAGCGGGGCAGACCATCTCTTCGTCTCATGTCACACGACTGGGCACCAGAAATTTCAGCTGACAACCCTGAATTTTGTAAGCATTTCATTAGGGTTCTCTGCAATGCCAATACTACTGATTACTGAAGGTTTTCGACCAGCATTAGACGTGTCATTACCCGAAATAATGATCCATTACGGAAAATTAGGTCCATCCCCTATGTATTATCCTCCCAGAAACCGAACTATATTCACCTTTTTTTCAGGAGGAGAGCATGGATATGCAAGGAAGATATTATTTAAACACTGGCTAAACAAGGACGATGAAGTTCAAGTGCGCGATTACCTTCCGAAACACCTCAAGTATTCAGAGATGATGAGCCGAAGCAAGTTTTGTTTATGCCCTAGTGTGTGGGAGGTTTCCAGCCCTAGAGTGATCGAGTCGATATTTGCCAGTTGCATCCCGGTTATAATTTCCGACGGGTATTATCTACCGTTTAGCGATGTTCTGAACTGGAGCAAATTTTTGATCCGTATACCGGTTTCAAAACAATTCTGA 864 44.79 MLHAEAKEMQNIFRVWAYKEGDEPIFHKAPMNDIYSIGGQFMAEVESGKSQFSTRNPDEAAAFYLPLSVVNIMRYVYRPYTNYSRDRLQDIVKDYIEAMSHRYPYWNASSGADHLFVSCHTTGHQKFQLTTLNFVSISLGFSAMPILLITEGFRPALDVSLPEIMIHYGKLGPSPMYYPPRNRTIFTFFSGGEHGYARKILFKHWLNKDDEVQVRDYLPKHLKYSEMMSRSKFCLCPSVWEVSSPRVIESIFASCIPVIISDGYYLPFSDVLNWSKFLIRIPVSKQF 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11291758 11292726 + Conep07aG0174100.1 Cone7ag1690 442286

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1690 287 Pfam Exostosin family 26 283 IPR040911 -
Cone7ag1690 287 PANTHER EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED 7 284 IPR004263 GO:0006486(InterPro)|GO:0016757(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1690 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone7ag1690 Cone-Chr7:11291758 Cone8ag0412 Cone-Chr8:2541504 6.16E-56 dispersed
Cone7ag1690 Cone-Chr7:11291758 Cone7ag1691 Cone-Chr7:11293819 7.32E-79 tandem
Cone2ag0206 Cone-Chr2:1091187 Cone7ag1690 Cone-Chr7:11291758 4.70E-99 wgd
Cone4ag1775 Cone-Chr4:12972090 Cone7ag1690 Cone-Chr7:11291758 2.72E-166 wgd
Cone4ag0653 Cone-Chr4:3094798 Cone7ag1690 Cone-Chr7:11291758 2.39E-91 wgd
Cone7ag0612 Cone-Chr7:2983903 Cone7ag1690 Cone-Chr7:11291758 7.10E-92 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g504 Blo01g01394 . . . . Bpe02g00555 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone7ag1690 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002125 1 2 2 1 2 2 2 2 2 2 1 2 2 2 2 2 2 5 2 2 2 2 2 2 2 1 2 3 2 7 65