Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone7ag1691 ATGAATAGGAGTAGAGGAGAAAAGCTCGAACAGGGACTAGCTCGTGCAAGAGATTCGATTCGCAGAGCTGCTTCGCTGCCAAACCGCTCGTCAAAGATCGACGGCTTTGATCACGCTCACTCCATTCAAGTCTACCGTAATCCAAACGCATTTTACCAGAGCTACTTGGAGATGGAAAAGAGATTCAAGGTCTACGTGTATTCAGAAGGAGAGTTGCCGGTCGCACACGACGGACCCTGTAAAGACATATACACAGTCGAAGGGCGGTTCATCCACGAAATGGAGAATGGTGTGGGCCACAGGTTCAGGACCAGAGACCCAAACCGGGCCCACGTCTACTTCATGCCCTTCAGTGTGACGTGGATGGTAAAGTACCTCTACAAACCCCTCACCTTCGACCTCACACCTCTTAAGCAATACGTGTCTGATTATGTGAGAGTCGTATCTATGAAGTACCCCTTCTGGAATAGAACCCAAGGGACTGACCACTTCATGCTTGCCTGCCATGATTGGGGCCCACATGCATCAGAGGGCAACCCAATTCTCTACAACACGTCCATTCGGGTCCTCTGTAATGCCAACACCTCAGAAGGCTTCAAACCGCAAAAGGATGTTACTCTTCCAGAAATCCATCTCTACGGAGGCGACTTATCGCCCAAACTCCGAAACCCATCCCCAAACAACCCACGGCCCAATCTAGCGTTCTTTTCAGGTGGGCTTCACGGCCCAATAAGGCCCATCCTACTCCACCACTGGAAAGACCTTGACGACGATCTCCGTGTCTATGAATACCTCCCTAAAGACCTTGACTACTACACTTTCATGCTCGAGTCCAAATTCTGTTTGTGCCCAAGTGGGTATGAAGTTGCCAGCCCAAGAATTGTGGAGGCCATTTACGCTGAATGTGTGCCTGTGATTTTGTCGCAGAATTATGTGCTGCCTTTTAGCGATGTCCTGAGATGGGAGGCCTTTTCTGTTCAGGTGGATGTCTCTGACATTCCCAGATTGAAGGAGATCTTGAGGGCCATTCCAGAAGATAATTATGTTAGGCTTCTGGAAGGTCTGAGGATGGTAAGGAAGCATTTTGTTCTCAACCAGCCTGCCAAGAGATTCGATGTGTTTCATATGATCTTACATTCCATATGGCTTCGGAGATTAAATGTAAGACCCCGTCGCTAA 1179 48.85 MNRSRGEKLEQGLARARDSIRRAASLPNRSSKIDGFDHAHSIQVYRNPNAFYQSYLEMEKRFKVYVYSEGELPVAHDGPCKDIYTVEGRFIHEMENGVGHRFRTRDPNRAHVYFMPFSVTWMVKYLYKPLTFDLTPLKQYVSDYVRVVSMKYPFWNRTQGTDHFMLACHDWGPHASEGNPILYNTSIRVLCNANTSEGFKPQKDVTLPEIHLYGGDLSPKLRNPSPNNPRPNLAFFSGGLHGPIRPILLHHWKDLDDDLRVYEYLPKDLDYYTFMLESKFCLCPSGYEVASPRIVEAIYAECVPVILSQNYVLPFSDVLRWEAFSVQVDVSDIPRLKEILRAIPEDNYVRLLEGLRMVRKHFVLNQPAKRFDVFHMILHSIWLRRLNVRPRR 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11293819 11295886 + Conep07aG0174200.1 Cone7ag1691 442287

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone7ag1691 392 Pfam Exostosin family 59 343 IPR040911 -
Cone7ag1691 392 PANTHER EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED 7 385 IPR004263 GO:0006486(InterPro)|GO:0016757(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone7ag1691 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0491 Cone-Chr1:4800811 Cone7ag1691 Cone-Chr7:11293819 5.98E-29 dispersed
Cone2ag0206 Cone-Chr2:1091187 Cone7ag1691 Cone-Chr7:11293819 2.41E-139 dispersed
Cone4ag1775 Cone-Chr4:12972090 Cone7ag1691 Cone-Chr7:11293819 1.72E-122 dispersed
Cone7ag0612 Cone-Chr7:2983903 Cone7ag1691 Cone-Chr7:11293819 7.42E-130 dispersed
Cone7ag1691 Cone-Chr7:11293819 Cone8ag0203 Cone-Chr8:1078749 2.84E-75 dispersed
Cone7ag1690 Cone-Chr7:11291758 Cone7ag1691 Cone-Chr7:11293819 7.32E-79 tandem
Cone10ag0194 Cone-Chr10:969661 Cone7ag1691 Cone-Chr7:11293819 8.83E-162 transposed
Cone10ag0530 Cone-Chr10:2444591 Cone7ag1691 Cone-Chr7:11293819 1.78E-68 transposed
Cone4ag1239 Cone-Chr4:10298582 Cone7ag1691 Cone-Chr7:11293819 2.65E-100 transposed
Cone8ag0412 Cone-Chr8:2541504 Cone7ag1691 Cone-Chr7:11293819 7.15E-103 transposed
Cone4ag1776 Cone-Chr4:12975063 Cone7ag1691 Cone-Chr7:11293819 3.53E-65 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g294 Blo01g01393 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone7ag1691 . . . . . . Blo17g00071 . . Bda13g01333 Bpe14g00515 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g503 Blo01g01393 . . . . Bpe02g00556 . . Cmo05g00377 . . Cma05g00375 . . Sed01g1382 . . Bhi04g00016 Tan02g2733 Cmetu03g0444 . Hepe10g0241 . Lcy13g1800 . . . . . . . Cone4ag1775 Cone7ag1691 . . . . . Cme03g01604 . . . . . . . . . . . . . . Car05g00319 Cpe11g00321 . . . . . . . . Cla08g01344 Cam08g1807 Cec08g1386 Cco08g1515 Clacu08g1500 . Cre08g1287 Lsi08g01216 . Chy03g01109 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012011 0 1 1 0 1 1 1 1 1 1 2 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 30